FFCP PHASE1:Hg19::chr1:172878709..172878712,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:172878709..172878712,- | |||
|description=CAGE_peak_at_chr1:172878709..172878712,- | |description=CAGE_peak_at_chr1:172878709..172878712,- | ||
|id=chr1:172878709..172878712,- | |id=chr1:172878709..172878712,- | ||
|ontology_enrichment_celltype=CL:0002139;1.45e-26;24!CL:0000071;2.64e-26;18!CL:1000413;7.30e-24;9!CL:0002544;1.42e-20;6!CL:0000115;1.71e-17;36!CL:0000342;1.50e-14;1!CL:0002565;1.50e-14;1!CL:0000213;2.68e-10;58!CL:0000215;2.68e-10;58!CL:0002078;4.11e-10;45!CL:0002543;6.49e-10;6!CL:0002545;4.08e-08;2!CL:0002593;6.35e-08;2 | |ontology_enrichment_celltype=CL:0002139!7.04e-27!24;CL:0000071!8.21e-21!18;CL:0002546!8.21e-21!18;CL:0000115!4.65e-17!35;CL:0000222!2.77e-15!119;CL:0002078!1.04e-12!44;CL:0002620!7.57e-12!23;CL:0002543!1.34e-11!6;CL:0000213!3.82e-10!57;CL:0000215!3.82e-10!57;CL:0002371!1.85e-09!591;CL:0000144!2.24e-09!625;CL:0000057!3.89e-09!75;CL:0000055!6.20e-09!180;CL:1000413!2.27e-08!9;CL:0000192!6.05e-08!42;CL:0000514!6.05e-08!42;CL:0005020!1.30e-07!6;CL:0002138!1.30e-07!6;CL:0005022!1.30e-07!6;CL:0002551!2.19e-07!6;CL:0000548!2.69e-07!679;CL:0000004!2.69e-07!679;CL:0000255!2.69e-07!679;CL:0000012!3.43e-07!682;CL:0000048!3.77e-07!430;CL:0000680!4.38e-07!57;CL:0000056!4.38e-07!57;CL:0000355!4.38e-07!57;CL:0000723!7.08e-07!436;CL:0000183!9.56e-07!59 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;1.45e-26;24!CL:0000071;2.64e-26;18!CL:1000413;7.30e-24;9!CL:0002544;1.42e-20;6!CL:0000115;1.71e-17;36!CL:0000342;1.50e-14;1!CL:0002565;1.50e-14;1!CL:0000213;2.68e-10;58!CL:0000215;2.68e-10;58!CL:0002078;4.11e-10;45!CL:0002543;6.49e-10;6!CL:0002545;4.08e-08;2!CL:0002593;6.35e-08;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002139,1.11e-26,24;CL:0000071,1.59e-26,18;CL:0002546,1.59e-26,18;CL:1000413,4.69e-24,9;CL:0002544,7.79e-21,6;CL:0000115,1.22e-17,36;CL:0000342,2.11e-14,1;CL:0002565,2.11e-14,1;CL:0002078,5.16e-14,45;CL:0000213,9.43e-11,58;CL:0000215,9.43e-11,58;CL:0002543,5.43e-10,6;CL:0002545,4.09e-08,2;CL:0000222,6.10e-08,121;CL:0002593,8.04e-08,2;CL:0000076,2.27e-07,63 | ||
|ontology_enrichment_uberon=UBERON:0004638;2.64e-26;18!UBERON:0001986;2.64e-26;18!UBERON:0004852;2.64e-26;18!UBERON:0003915;7.30e-24;9!UBERON:0004700;7.30e-24;9!UBERON:0001917;7.30e-24;9!UBERON:0000487;1.72e-21;22!UBERON:0000490;4.47e-20;33!UBERON:0006914;6.90e-19;25!UBERON:0000947;6.96e-16;21!UBERON:0010191;6.96e-16;21!UBERON:0002506;1.50e-14;1!UBERON:0001769;1.50e-14;1!UBERON:0004573;7.46e-14;33!UBERON:0004571;7.46e-14;33!UBERON:0007500;1.03e-13;56!UBERON:0001981;1.03e-13;56!UBERON:0004537;1.03e-13;56!UBERON:0001637;2.82e-13;42!UBERON:0003509;2.82e-13;42!UBERON:0004572;2.82e-13;42!UBERON:0000055;4.76e-10;65!UBERON:0001009;6.89e-09;112!UBERON:0000025;1.39e-08;93!UBERON:0005800;4.08e-08;2!UBERON:0001515;4.08e-08;2!UBERON:0002049;5.94e-08;75!UBERON:0007798;5.94e-08;75!UBERON:0002456;6.35e-08;2!UBERON:0004535;2.04e-07;109!UBERON:0003914;4.59e-07;74!UBERON:0001638;6.79e-07;9!UBERON:0003920;6.79e-07;9!UBERON:0004582;6.79e-07;9 | |ontology_enrichment_development_v019=CL:0002546;2.64e-26;18 | ||
|ontology_enrichment_disease=DOID:17!9.33e-09!5;DOID:450!9.33e-09!5;DOID:66!9.33e-09!5;DOID:423!9.33e-09!5;DOID:0080000!9.33e-09!5;DOID:11722!9.33e-09!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!8.86e-25!69;UBERON:0002049!1.70e-22!79;UBERON:0007798!1.70e-22!79;UBERON:0001986!8.21e-21!18;UBERON:0004638!8.21e-21!18;UBERON:0004852!8.21e-21!18;UBERON:0000487!2.07e-19!22;UBERON:0001981!5.03e-19!60;UBERON:0007500!5.03e-19!60;UBERON:0004537!5.03e-19!60;UBERON:0006965!5.03e-19!60;UBERON:0004535!1.30e-17!110;UBERON:0001009!6.47e-17!113;UBERON:0006914!1.12e-16!25;UBERON:0004872!1.14e-15!84;UBERON:0000490!4.47e-15!138;UBERON:0003914!2.94e-12!118;UBERON:0001637!8.31e-12!42;UBERON:0003509!8.31e-12!42;UBERON:0004572!8.31e-12!42;UBERON:0004290!2.55e-10!70;UBERON:0000914!4.60e-10!83;UBERON:0002329!4.60e-10!83;UBERON:0003077!4.60e-10!83;UBERON:0003059!4.60e-10!83;UBERON:0007282!4.60e-10!83;UBERON:0009618!4.60e-10!83;UBERON:0007285!4.60e-10!83;UBERON:0004573!4.69e-10!33;UBERON:0004571!4.69e-10!33;UBERON:0004111!6.45e-10!241;UBERON:0000486!4.17e-09!82;UBERON:0000119!9.28e-09!312;UBERON:0003102!1.20e-08!95;UBERON:0000477!1.22e-08!286;UBERON:0001473!1.28e-08!8;UBERON:0004536!1.28e-08!8;UBERON:0006558!1.28e-08!8;UBERON:0003915!2.27e-08!9;UBERON:0004700!2.27e-08!9;UBERON:0001917!2.27e-08!9;UBERON:0000483!8.00e-08!309;UBERON:0001638!1.35e-07!9;UBERON:0003920!1.35e-07!9;UBERON:0004582!1.35e-07!9;UBERON:0002067!1.72e-07!9;UBERON:0004016!1.72e-07!9;UBERON:0010083!1.72e-07!9;UBERON:0005256!1.73e-07!143;UBERON:0002097!3.87e-07!40;UBERON:0002465!8.24e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.64e-26;18!UBERON:0001986;2.64e-26;18!UBERON:0004852;2.64e-26;18!UBERON:0003915;7.30e-24;9!UBERON:0004700;7.30e-24;9!UBERON:0001917;7.30e-24;9!UBERON:0000487;1.72e-21;22!UBERON:0000490;4.47e-20;33!UBERON:0006914;6.90e-19;25!UBERON:0000947;6.96e-16;21!UBERON:0010191;6.96e-16;21!UBERON:0002506;1.50e-14;1!UBERON:0001769;1.50e-14;1!UBERON:0004573;7.46e-14;33!UBERON:0004571;7.46e-14;33!UBERON:0007500;1.03e-13;56!UBERON:0001981;1.03e-13;56!UBERON:0004537;1.03e-13;56!UBERON:0001637;2.82e-13;42!UBERON:0003509;2.82e-13;42!UBERON:0004572;2.82e-13;42!UBERON:0000055;4.76e-10;65!UBERON:0001009;6.89e-09;112!UBERON:0000025;1.39e-08;93!UBERON:0005800;4.08e-08;2!UBERON:0001515;4.08e-08;2!UBERON:0002049;5.94e-08;75!UBERON:0007798;5.94e-08;75!UBERON:0002456;6.35e-08;2!UBERON:0004535;2.04e-07;109!UBERON:0003914;4.59e-07;74!UBERON:0001638;6.79e-07;9!UBERON:0003920;6.79e-07;9!UBERON:0004582;6.79e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.59e-26,18;UBERON:0001986,1.59e-26,18;UBERON:0004852,1.59e-26,18;UBERON:0003915,4.69e-24,9;UBERON:0004700,4.69e-24,9;UBERON:0001917,4.69e-24,9;UBERON:0000487,1.14e-21,22;UBERON:0002049,2.22e-19,78;UBERON:0007798,2.22e-19,78;UBERON:0006914,4.80e-19,25;UBERON:0000055,1.72e-18,68;UBERON:0007500,2.01e-17,59;UBERON:0001981,2.01e-17,59;UBERON:0004537,2.01e-17,59;UBERON:0006965,2.01e-17,59;UBERON:0000947,4.94e-16,21;UBERON:0010191,4.94e-16,21;UBERON:0001637,4.84e-15,42;UBERON:0003509,4.84e-15,42;UBERON:0004572,4.84e-15,42;UBERON:0002506,2.11e-14,1;UBERON:0001769,2.11e-14,1;UBERON:0004573,2.51e-14,33;UBERON:0004571,2.51e-14,33;UBERON:0004535,1.62e-13,109;UBERON:0001009,4.04e-13,112;UBERON:0004872,4.10e-12,83;UBERON:0003914,2.65e-08,117;UBERON:0005800,4.09e-08,2;UBERON:0001515,4.09e-08,2;UBERON:0000490,7.40e-08,148;UBERON:0002456,8.04e-08,2;UBERON:0001638,6.04e-07,9;UBERON:0003920,6.04e-07,9;UBERON:0004582,6.04e-07,9 | |||
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|short_description=p@chr1:172878709..172878712,- | |short_description=p@chr1:172878709..172878712,- | ||
}} | }} |
Latest revision as of 00:28, 28 July 2015
Short description: | p@chr1:172878709..172878712, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:172878709..172878712, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.11e-26 | 24 |
blood vessel endothelial cell | 1.59e-26 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.59e-26 | 18 |
endothelial cell of artery | 4.69e-24 | 9 |
aortic endothelial cell | 7.79e-21 | 6 |
endothelial cell | 1.22e-17 | 36 |
pigment cell (sensu Vertebrata) | 2.11e-14 | 1 |
iris pigment epithelial cell | 2.11e-14 | 1 |
meso-epithelial cell | 5.16e-14 | 45 |
lining cell | 9.43e-11 | 58 |
barrier cell | 9.43e-11 | 58 |
vein endothelial cell | 5.43e-10 | 6 |
thoracic aorta endothelial cell | 4.09e-08 | 2 |
mesodermal cell | 6.10e-08 | 121 |
smooth muscle cell of the internal thoracic artery | 8.04e-08 | 2 |
squamous epithelial cell | 2.27e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.59e-26 | 18 |
endothelium | 1.59e-26 | 18 |
cardiovascular system endothelium | 1.59e-26 | 18 |
endothelial tube | 4.69e-24 | 9 |
arterial system endothelium | 4.69e-24 | 9 |
endothelium of artery | 4.69e-24 | 9 |
simple squamous epithelium | 1.14e-21 | 22 |
vasculature | 2.22e-19 | 78 |
vascular system | 2.22e-19 | 78 |
squamous epithelium | 4.80e-19 | 25 |
vessel | 1.72e-18 | 68 |
epithelial tube open at both ends | 2.01e-17 | 59 |
blood vessel | 2.01e-17 | 59 |
blood vasculature | 2.01e-17 | 59 |
vascular cord | 2.01e-17 | 59 |
aorta | 4.94e-16 | 21 |
aortic system | 4.94e-16 | 21 |
artery | 4.84e-15 | 42 |
arterial blood vessel | 4.84e-15 | 42 |
arterial system | 4.84e-15 | 42 |
iris epithelium | 2.11e-14 | 1 |
iris | 2.11e-14 | 1 |
systemic artery | 2.51e-14 | 33 |
systemic arterial system | 2.51e-14 | 33 |
cardiovascular system | 1.62e-13 | 109 |
circulatory system | 4.04e-13 | 112 |
splanchnic layer of lateral plate mesoderm | 4.10e-12 | 83 |
epithelial tube | 2.65e-08 | 117 |
segment of aorta | 4.09e-08 | 2 |
thoracic aorta | 4.09e-08 | 2 |
unilaminar epithelium | 7.40e-08 | 148 |
internal thoracic artery | 8.04e-08 | 2 |
vein | 6.04e-07 | 9 |
venous blood vessel | 6.04e-07 | 9 |
venous system | 6.04e-07 | 9 |