FFCP PHASE1:Hg19::chr1:16481542..16481549,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:16481542..16481549,- | |||
|description=CAGE_peak_at_chr1:16481542..16481549,- | |description=CAGE_peak_at_chr1:16481542..16481549,- | ||
|id=chr1:16481542..16481549,- | |id=chr1:16481542..16481549,- | ||
|ontology_enrichment_celltype=CL:0000066!8.84e-44!254;CL:0002076!3.08e-12!43;CL:1000507!1.65e-11!12;CL:1000494!1.65e-11!12;CL:1000449!2.86e-11!16;CL:1000497!3.58e-11!18;CL:0002518!3.58e-11!18;CL:0000223!8.51e-09!59;CL:0002681!2.04e-08!13;CL:0002584!2.04e-08!13;CL:0000076!9.57e-08!62;CL:0000220!2.52e-07!246;CL:0002368!3.37e-07!13;CL:0002321!4.11e-07!248 | |ontology_enrichment_celltype=CL:0000066!8.84e-44!254;CL:0002076!3.08e-12!43;CL:1000507!1.65e-11!12;CL:1000494!1.65e-11!12;CL:1000449!2.86e-11!16;CL:1000497!3.58e-11!18;CL:0002518!3.58e-11!18;CL:0000223!8.51e-09!59;CL:0002681!2.04e-08!13;CL:0002584!2.04e-08!13;CL:0000076!9.57e-08!62;CL:0000220!2.52e-07!246;CL:0002368!3.37e-07!13;CL:0002321!4.11e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:1000507;6.96e-25;10!CL:1000494;6.96e-25;10!CL:1000449;2.56e-21;15!CL:1000497;1.17e-18;17!CL:0002518;1.17e-18;17!CL:0002681;1.91e-15;12!CL:0002584;1.91e-15;12!CL:0000239;4.04e-08;3!CL:1000615;4.04e-08;3!CL:0002306;4.04e-08;3!CL:0000322;7.76e-08;3!CL:0002076;1.16e-07;42!CL:0002577;1.47e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.59e-25,10;CL:1000494,7.59e-25,10;CL:1000449,2.77e-21,15;CL:1000497,1.25e-18,17;CL:0002518,1.25e-18,17;CL:0000066,1.29e-17,253;CL:0002681,2.84e-15,12;CL:0002584,2.84e-15,12;CL:0000239,3.78e-08,3;CL:1000615,3.78e-08,3;CL:0002306,3.78e-08,3;CL:0002076,5.60e-08,42;CL:0000322,7.53e-08,3;CL:0002577,1.25e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.11e-11!106;DOID:0050687!6.89e-08!143 | |ontology_enrichment_disease=DOID:305!3.11e-11!106;DOID:0050687!6.89e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.82e-13!169;UBERON:0000925!5.82e-13!169;UBERON:0006595!5.82e-13!169;UBERON:0009773!1.65e-11!12;UBERON:0001231!1.65e-11!12;UBERON:0004810!1.65e-11!12;UBERON:0004211!2.86e-11!16;UBERON:0001285!2.86e-11!16;UBERON:0007684!2.86e-11!16;UBERON:0003220!2.86e-11!16;UBERON:0004208!2.86e-11!16;UBERON:0000064!3.90e-11!219;UBERON:0006554!4.08e-11!44;UBERON:0001008!1.12e-10!45;UBERON:0006555!2.44e-10!17;UBERON:0005103!2.44e-10!17;UBERON:0000083!2.44e-10!17;UBERON:0009201!2.44e-10!17;UBERON:0004819!2.44e-10!17;UBERON:0006553!2.44e-10!17;UBERON:0003074!2.44e-10!17;UBERON:0003060!2.44e-10!17;UBERON:0000058!4.26e-10!26;UBERON:0000080!1.62e-09!18;UBERON:0002120!1.62e-09!18;UBERON:0004875!1.62e-09!18;UBERON:0005721!1.62e-09!18;UBERON:0005754!1.62e-09!18;UBERON:0007297!1.62e-09!18;UBERON:0003064!2.02e-09!37;UBERON:0000464!3.31e-09!104;UBERON:0001007!9.03e-09!155;UBERON:0001555!9.03e-09!155;UBERON:0007026!9.03e-09!155;UBERON:0001851!1.21e-08!16;UBERON:0005177!1.27e-08!107;UBERON:0003887!1.78e-08!21;UBERON:0001225!2.04e-08!13;UBERON:0008987!2.04e-08!13;UBERON:0004876!3.91e-08!20;UBERON:0000466!4.03e-08!126;UBERON:0002113!9.43e-08!27;UBERON:0003918!9.43e-08!27;UBERON:0005095!9.43e-08!27;UBERON:0007687!9.43e-08!27;UBERON:0000077!1.20e-07!130;UBERON:0000489!1.25e-07!32;UBERON:0007625!1.29e-07!11;UBERON:0004921!2.66e-07!129;UBERON:0004185!2.66e-07!129;UBERON:0000062!4.59e-07!511;UBERON:0000481!5.53e-07!347;UBERON:0000065!6.33e-07!53;UBERON:0005911!6.55e-07!82;UBERON:0001048!8.78e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;6.96e-25;10!UBERON:0009773;6.96e-25;10!UBERON:0001231;6.96e-25;10!UBERON:0004810;6.96e-25;10!UBERON:0006555;2.56e-21;15!UBERON:0004819;2.56e-21;15!UBERON:0001285;2.56e-21;15!UBERON:0007684;2.56e-21;15!UBERON:0006554;7.09e-19;30!UBERON:0001008;7.09e-19;30!UBERON:0001225;1.91e-15;12!UBERON:0008987;1.91e-15;12!UBERON:0000489;4.48e-13;29!UBERON:0002113;7.68e-13;24!UBERON:0011143;7.68e-13;24!UBERON:0001851;3.13e-12;15!UBERON:0000353;3.13e-12;15!UBERON:0000365;9.34e-10;5!UBERON:0005910;3.34e-08;6!UBERON:0006853;4.04e-08;3!UBERON:0007685;4.04e-08;3!UBERON:0004134;4.04e-08;3!UBERON:0004821;7.76e-08;3!UBERON:0007499;7.76e-08;3!UBERON:0003215;7.76e-08;3!UBERON:0010368;7.76e-08;3!UBERON:0009911;7.76e-08;3!UBERON:0002299;7.76e-08;3!UBERON:0006524;7.76e-08;3!UBERON:0008874;7.76e-08;3!UBERON:0002169;7.76e-08;3!UBERON:0004894;7.76e-08;3 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,3.48900583986214,1.96597234917155,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.408001382488506,0.313454721478088,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,1.55210578223795,0.263504357079378,0,3.64295288292542,0.741568885568859,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,0,0,0.208994966536811,0.258416759169329,0,0.66944122552934,0.402829317109147,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.966304265816484,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.337169380156203,0,0.110293972732394,0,0.474541238222193,0.134831308160164,0,0.769494313892781,0,0,0,1.47008711385542,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.402115889646523,1.01847289674383,0,0,1.44331342025273,0.231860809950154,0.352226082707465,0.433099343283221,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0.626909658919938,1.45316969256981,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0.336393253036082,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74306691720059,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,1.21251028578504,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.802025881213139,1.01289087829486,0,0,0,2.25599806453706,2.00239876471478,1.56869953835371,2.92278449306521,0.422206515571503,0,0.340187410553031,0.647747748306418,0,0.812839312631559,1.00337954770971,2.29388645740534,0.831076008928724,2.23874754722178,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.330569830721956,0.192190067365106,1.27612712494584,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,1.15466535270614,0.670302275535787,0,0,2.15252686335615,0,1.33029046061003,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,2.15012491469462,0,0,0.111308705022906,0,0,0,0,0,0.20453736500431,0,0,0.718946809178615,0.537063524026827,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.455173793141999,1.27126825146383,0.709163045303809,0,0,0,0,0,0,0,0,0,0.10893846351899,0.139423744278603,0,0,0,0,0.108647371922008,0.638002319463839,0.457987967009312,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.391329237864179,0,0,1.20990716048664,0,0,0,0,1.32930774541437,0,0.313932918407225,0,0,0,0.173559738335131,0.783939179315021,0.870592065804026,0,0.343972064943233,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.581934098930517,0,0,0.411125773940253,0.19871461170299,0,0,0.0801588202515337,0.640358984218058,0.19980960958213,0,0,0,2.0167671718341,0.248505071130865,0.235694034616795,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0,0,0,0,0,0.136203406111576,0,0,0,0,1.5476039091159,0,0.670869375198532,0,0.209818352539992,0.633602019116439,0,0.959575986597226,0,0,0.25426853765475,0,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0.499921631848426,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0.521988583930423,0.906823702049089,0.231522474323834,0,0.358177682162975,0,0,0.883445729729405,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,1.26787274015176,0,0,0,0,0,1.258915569475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0.138314504928436,0,0,0.196295437002051,0,0,0.115525666150338,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.49131575253029,1.18284868973636,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0,0,0,0.118193840883968,1.55723962648897,0,0.157115589916002,0.560544326627578,0,0.647782773655864,0,0,0,0,0,0,0.207216164163037,0,0.691259661814092,0,0.118332000730565,0,0,1.60374807980835,0,0,0.894843454382338,1.07965256976767,0.853425474875886,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0.470317296361523,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,1.04313776695919,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.426467963801962,0.23806443146374,0,0,0.672791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| ||
|short_description=p@chr1:16481542..16481549,- | |short_description=p@chr1:16481542..16481549,- | ||
}} | }} |
Latest revision as of 23:53, 27 July 2015
Short description: | p@chr1:16481542..16481549, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:16481542..16481549, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.59e-25 | 10 |
nephron tubule epithelial cell | 7.59e-25 | 10 |
epithelial cell of nephron | 2.77e-21 | 15 |
kidney cell | 1.25e-18 | 17 |
kidney epithelial cell | 1.25e-18 | 17 |
epithelial cell | 1.29e-17 | 253 |
kidney cortical cell | 2.84e-15 | 12 |
renal cortical epithelial cell | 2.84e-15 | 12 |
brush border epithelial cell | 3.78e-08 | 3 |
kidney cortex tubule cell | 3.78e-08 | 3 |
epithelial cell of proximal tubule | 3.78e-08 | 3 |
endo-epithelial cell | 5.60e-08 | 42 |
pneumocyte | 7.53e-08 | 3 |
placental epithelial cell | 1.25e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 7.59e-25 | 10 |
nephron epithelium | 2.77e-21 | 15 |
renal tubule | 2.77e-21 | 15 |
nephron tubule | 2.77e-21 | 15 |
nephron | 2.77e-21 | 15 |
uriniferous tubule | 2.77e-21 | 15 |
nephrogenic mesenchyme | 2.77e-21 | 15 |
urinary system structure | 3.07e-21 | 47 |
renal system | 9.96e-21 | 48 |
excretory tube | 7.13e-20 | 16 |
kidney epithelium | 7.13e-20 | 16 |
cortex of kidney | 2.84e-15 | 12 |
renal parenchyma | 2.84e-15 | 12 |
cortex | 4.28e-12 | 15 |
parenchyma | 4.28e-12 | 15 |
cavitated compound organ | 4.42e-12 | 31 |
kidney | 9.80e-12 | 26 |
kidney mesenchyme | 9.80e-12 | 26 |
upper urinary tract | 9.80e-12 | 26 |
kidney rudiment | 9.80e-12 | 26 |
kidney field | 9.80e-12 | 26 |
urothelium | 1.06e-09 | 5 |
trunk region element | 2.19e-09 | 101 |
transitional epithelium | 3.70e-08 | 6 |
renal cortex tubule | 3.78e-08 | 3 |
region of nephron tubule | 3.78e-08 | 3 |
proximal tubule | 3.78e-08 | 3 |
pulmonary alveolus epithelium | 7.53e-08 | 3 |
alveolus | 7.53e-08 | 3 |
pulmonary lobule | 7.53e-08 | 3 |
lobule | 7.53e-08 | 3 |
alveolus of lung | 7.53e-08 | 3 |
alveolar system | 7.53e-08 | 3 |
pulmonary acinus | 7.53e-08 | 3 |
alveolar sac | 7.53e-08 | 3 |
alveolar wall | 7.53e-08 | 3 |