FFCP PHASE1:Hg19::chr1:161085273..161085285,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:161085273..161085285,+ | |||
|description=CAGE_peak_at_chr1:161085273..161085285,+ | |description=CAGE_peak_at_chr1:161085273..161085285,+ | ||
|id=chr1:161085273..161085285,+ | |id=chr1:161085273..161085285,+ | ||
Latest revision as of 23:31, 27 July 2015
| Short description: | p@chr1:161085273..161085285, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr1:161085273..161085285, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr1:161085273..161085285+ |
|---|
0.0
1.0
2.0
3.0
4.0
5.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell of lung | 6.08e-19 | 19 |
| epithelial cell of pancreas | 9.63e-07 | 4 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| respiratory tract epithelium | 6.08e-19 | 19 |
| lung epithelium | 6.08e-19 | 19 |
| lung | 1.99e-16 | 22 |
| respiratory tube | 1.99e-16 | 22 |
| respiration organ | 1.99e-16 | 22 |
| pair of lungs | 1.99e-16 | 22 |
| lung primordium | 1.99e-16 | 22 |
| lung bud | 1.99e-16 | 22 |
| respiratory system epithelium | 5.28e-13 | 28 |
| thoracic cavity element | 8.82e-11 | 34 |
Showing 1 to 10 of 25 entries
| Ontology term | p-value | n |
|---|---|---|
| lung cancer | 7.51e-24 | 15 |
| respiratory system cancer | 2.15e-22 | 16 |
| squamous cell carcinoma | 6.68e-15 | 14 |
| tubular adenocarcinoma | 3.24e-12 | 2 |
| lung carcinoma | 8.37e-11 | 9 |
| carcinoma | 4.67e-10 | 106 |
| lung large cell carcinoma | 9.66e-09 | 3 |
| cell type cancer | 2.13e-07 | 143 |
| lung small cell carcinoma | 8.61e-07 | 4 |
| pancreatic cancer | 9.63e-07 | 4 |
Showing 1 to 10 of 10 entries
