FFCP PHASE1:Hg19::chr1:159836049..159836056,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:159836049..159836056,+
|short_description=p@chr1:159836049..159836056,+
|description=CAGE_peak_at_chr1:159836049..159836056,+
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:159836049..159836056,+ | |||
|coexpression_cluster_id=C412 | |||
|description=CAGE_peak_at_chr1:159836049..159836056,+ | |||
|id=chr1:159836049..159836056,+ | |||
|ontology_enrichment_celltype=CL:0000064!5.27e-20!3;CL:0005012!5.27e-20!3;CL:0000067!5.27e-20!3;CL:0002304!5.27e-20!3;CL:0002166!1.97e-09!3;CL:0002603!2.43e-09!3;CL:0000221!1.74e-08!71;CL:0000342!6.37e-08!1;CL:0002565!6.37e-08!1;CL:0002336!2.98e-07!1;CL:0002261!2.98e-07!1;CL:0002170!2.98e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002149;5.98e-34;6!CL:0002255;5.98e-34;6!CL:0000322;9.46e-18;3!CL:0000346;1.12e-17;3!CL:1000428;1.12e-17;3!CL:0002559;3.60e-11;5!CL:0000499;3.65e-08;28!CL:0002076;2.41e-07;42!CL:0002202;8.37e-07;9!CL:0002632;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,5.98e-34,6;CL:0002255,5.98e-34,6;CL:0000322,9.46e-18,3;CL:0000346,1.12e-17,3;CL:1000428,1.12e-17,3;CL:0002076,1.56e-11,42;CL:0002559,3.60e-11,5;CL:0000223,1.35e-08,58;CL:0000499,3.65e-08,28;CL:0002202,8.37e-07,9;CL:0002632,8.37e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0005795;6.99e-21;10 | |||
|ontology_enrichment_disease=DOID:5662!1.58e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3001;5.98e-34;6!DOID:3910;7.14e-26;2!DOID:3908;3.26e-11;5!DOID:299;5.06e-09;25!DOID:120;1.98e-08;27!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:193;6.44e-08;29!DOID:3905;8.37e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.98e-34,6;DOID:3910,7.14e-26,2;DOID:3908,3.26e-11,5;DOID:299,5.06e-09,25;DOID:120,1.98e-08,27;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:193,6.44e-08,29;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000488!3.51e-26!4;UBERON:0001778!5.27e-20!3;UBERON:0001775!5.27e-20!3;UBERON:0002203!1.58e-17!6;UBERON:0001768!1.58e-17!6;UBERON:0007625!1.27e-09!11;UBERON:0002200!1.27e-09!11;UBERON:0006876!1.27e-09!11;UBERON:0002506!6.37e-08!1;UBERON:0001769!6.37e-08!1;UBERON:0001801!1.41e-07!14;UBERON:0002370!2.32e-07!4;UBERON:0005058!2.32e-07!4;UBERON:0009113!2.32e-07!4;UBERON:0003295!2.32e-07!4;UBERON:0005562!2.32e-07!4;UBERON:0001708!2.80e-07!4;UBERON:0001704!2.80e-07!4;UBERON:0002372!3.17e-07!1;UBERON:0001961!3.17e-07!1;UBERON:0001744!3.17e-07!1;UBERON:0001735!3.17e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.14e-26;2!UBERON:0002173;7.14e-26;2!UBERON:0002186;7.14e-26;2!UBERON:0004821;9.46e-18;3!UBERON:0007499;9.46e-18;3!UBERON:0003215;9.46e-18;3!UBERON:0010368;9.46e-18;3!UBERON:0009911;9.46e-18;3!UBERON:0002299;9.46e-18;3!UBERON:0006524;9.46e-18;3!UBERON:0008874;9.46e-18;3!UBERON:0002169;9.46e-18;3!UBERON:0004894;9.46e-18;3!UBERON:0000412;1.12e-17;3!UBERON:0001992;1.12e-17;3!UBERON:0009856;1.13e-13;4!UBERON:0000995;9.17e-13;17!UBERON:0003975;4.07e-12;18!UBERON:0002073;3.60e-11;5!UBERON:0004175;1.53e-10;21!UBERON:0003134;1.10e-07;33!UBERON:0002067;8.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,7.14e-26,2;UBERON:0002173,7.14e-26,2;UBERON:0002186,7.14e-26,2;UBERON:0004821,9.46e-18,3;UBERON:0003215,9.46e-18,3;UBERON:0010368,9.46e-18,3;UBERON:0009911,9.46e-18,3;UBERON:0002299,9.46e-18,3;UBERON:0006524,9.46e-18,3;UBERON:0008874,9.46e-18,3;UBERON:0002169,9.46e-18,3;UBERON:0004894,9.46e-18,3;UBERON:0000412,1.12e-17,3;UBERON:0001992,1.12e-17,3;UBERON:0002073,3.60e-11,5;UBERON:0005086,3.60e-11,5;UBERON:0000995,1.53e-10,21;UBERON:0005795,4.14e-10,22;UBERON:0003975,4.14e-10,22;UBERON:0004175,5.06e-09,25;UBERON:0002067,8.85e-07,9;UBERON:0004016,8.85e-07,9;UBERON:0010083,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.850650583454319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55722532125772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8572234982512,16.2441619626164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258355639344024,0.434523000071005,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.850650583454319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55722532125772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8572234982512,16.2441619626164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258355639344024,0.434523000071005,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:159836049..159836056,+ | |||
}} | }} |
Latest revision as of 23:08, 27 July 2015
Short description: | p@chr1:159836049..159836056, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:159836049..159836056, + |
Coexpression cluster: | C412_serous_breast_papillotubular_ductus_seminal_kidney_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 5.98e-34 | 6 |
stromal cell of endometrium | 5.98e-34 | 6 |
pneumocyte | 9.46e-18 | 3 |
hair follicle dermal papilla cell | 1.12e-17 | 3 |
stem cell of epidermis | 1.12e-17 | 3 |
endo-epithelial cell | 1.56e-11 | 42 |
hair follicle cell | 3.60e-11 | 5 |
endodermal cell | 1.35e-08 | 58 |
stromal cell | 3.65e-08 | 28 |
epithelial cell of tracheobronchial tree | 8.37e-07 | 9 |
epithelial cell of lower respiratory tract | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 7.14e-26 | 2 |
alveolar duct | 7.14e-26 | 2 |
bronchiole | 7.14e-26 | 2 |
pulmonary alveolus epithelium | 9.46e-18 | 3 |
alveolus | 9.46e-18 | 3 |
pulmonary lobule | 9.46e-18 | 3 |
lobule | 9.46e-18 | 3 |
alveolus of lung | 9.46e-18 | 3 |
alveolar system | 9.46e-18 | 3 |
pulmonary acinus | 9.46e-18 | 3 |
alveolar sac | 9.46e-18 | 3 |
alveolar wall | 9.46e-18 | 3 |
dermal papilla | 1.12e-17 | 3 |
papillary layer of dermis | 1.12e-17 | 3 |
hair follicle | 3.60e-11 | 5 |
hair follicle placode | 3.60e-11 | 5 |
uterus | 1.53e-10 | 21 |
embryonic uterus | 4.14e-10 | 22 |
internal female genitalia | 4.14e-10 | 22 |
internal genitalia | 5.06e-09 | 25 |
dermis | 8.85e-07 | 9 |
dermatome | 8.85e-07 | 9 |
future dermis | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.98e-34 | 6 |
lung adenocarcinoma | 7.14e-26 | 2 |
non-small cell lung carcinoma | 3.26e-11 | 5 |
adenocarcinoma | 5.06e-09 | 25 |
female reproductive organ cancer | 1.98e-08 | 27 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
reproductive organ cancer | 6.44e-08 | 29 |
lung carcinoma | 8.37e-07 | 9 |