FFCP PHASE1:Hg19::chr1:155954306..155954320,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:155954306..155954320,- | |||
|coexpression_cluster_id=C184 | |||
|description=CAGE_peak_at_chr1:155954306..155954320,- | |description=CAGE_peak_at_chr1:155954306..155954320,- | ||
|id=chr1:155954306..155954320,- | |id=chr1:155954306..155954320,- | ||
|ontology_enrichment_celltype=CL:0002322!2.91e-14!5;CL:0000066!9.53e-12!254;CL:0000039!3.23e-10!7;CL:0000586!3.23e-10!7;CL:0002368!6.26e-08!13 | |ontology_enrichment_celltype=CL:0002322!2.91e-14!5;CL:0000066!9.53e-12!254;CL:0000039!3.23e-10!7;CL:0000586!3.23e-10!7;CL:0002368!6.26e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0000167;1.53e-21;1!CL:0000164;1.53e-21;1!CL:0000502;1.53e-21;1!CL:0000172;1.53e-21;1!CL:0000173;1.53e-21;1!CL:0000082;4.58e-10;19!CL:0002178;5.54e-08;3!CL:0002328;7.50e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,1.53e-21,1;CL:0000164,1.53e-21,1;CL:0000502,1.53e-21,1;CL:0000172,1.53e-21,1;CL:0000173,1.53e-21,1;CL:0002351,1.53e-21,1;CL:0000082,4.44e-10,19;CL:0002178,5.54e-08,3;CL:0002328,7.26e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002351;1.53e-21;1 | |||
|ontology_enrichment_disease=DOID:305!3.39e-10!106;DOID:3493!3.42e-10!2;DOID:0050687!2.49e-08!143 | |ontology_enrichment_disease=DOID:305!3.39e-10!106;DOID:3493!3.42e-10!2;DOID:0050687!2.49e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:3493;2.72e-40;2!DOID:4430;1.53e-21;1!DOID:0050619;2.30e-21;1!DOID:1357;2.30e-21;1!DOID:5409;6.02e-21;4!DOID:1325;2.06e-12;7!DOID:3904;2.06e-12;7!DOID:0050615;6.37e-12;16!DOID:3905;7.24e-10;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,3.01e-40,2;DOID:4430,1.53e-21,1;DOID:0050619,2.30e-21,1;DOID:1357,2.30e-21,1;DOID:5409,5.72e-21,4;DOID:1325,2.00e-12,7;DOID:3904,2.00e-12,7;DOID:0050615,6.25e-12,16;DOID:3905,7.08e-10,9;DOID:305,6.54e-09,106;DOID:0050687,1.62e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.06e-09!8;UBERON:0000464!7.27e-08!104;UBERON:0000466!8.62e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;2.30e-21;1!UBERON:0001825;2.30e-21;1!UBERON:0004802;4.58e-10;19!UBERON:0000115;4.58e-10;19!UBERON:0002048;8.94e-09;22!UBERON:0004807;8.94e-09;22!UBERON:0000117;8.94e-09;22!UBERON:0000171;8.94e-09;22!UBERON:0000170;8.94e-09;22!UBERON:0004815;7.50e-08;3!UBERON:0002031;7.50e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,2.30e-21,1;UBERON:0001825,2.30e-21,1;UBERON:0004802,4.44e-10,19;UBERON:0000115,4.44e-10,19;UBERON:0002048,8.70e-09,22;UBERON:0000117,8.70e-09,22;UBERON:0000171,8.70e-09,22;UBERON:0000170,8.70e-09,22;UBERON:0005597,8.70e-09,22;UBERON:0000118,8.70e-09,22;UBERON:0004815,7.26e-08,3;UBERON:0002031,7.26e-08,3;UBERON:0004807,5.03e-07,28 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853815942907168,0,0.464775771478074,0.518305275076852,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0.103688191397247,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.157611414598396,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,4.71162288750703,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33710794291826,1.09726132484042,0,0,0,0,0.701818390386317,0,0,2.823652050974,0,8.75584492686706,0,0,0.470317296361523,0,12.4908569963862,0,0,0,0,0,0,0,0.892769693028288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,1.06886962106224,0.827054095813604,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853815942907168,0,0.464775771478074,0.518305275076852,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0.103688191397247,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.157611414598396,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,4.71162288750703,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33710794291826,1.09726132484042,0,0,0,0,0.701818390386317,0,0,2.823652050974,0,8.75584492686706,0,0,0.470317296361523,0,12.4908569963862,0,0,0,0,0,0,0,0.892769693028288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,1.06886962106224,0.827054095813604,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:155954306..155954320,- | |short_description=p@chr1:155954306..155954320,- | ||
}} | }} |
Latest revision as of 22:26, 27 July 2015
Short description: | p@chr1:155954306..155954320, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:155954306..155954320, - |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 1.53e-21 | 1 |
enteroendocrine cell | 1.53e-21 | 1 |
type D enteroendocrine cell | 1.53e-21 | 1 |
somatostatin secreting cell | 1.53e-21 | 1 |
pancreatic D cell | 1.53e-21 | 1 |
progenitor cell of endocrine pancreas | 1.53e-21 | 1 |
epithelial cell of lung | 4.44e-10 | 19 |
epithelial cell of stomach | 5.54e-08 | 3 |
bronchial epithelial cell | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 2.30e-21 | 1 |
paranasal sinus | 2.30e-21 | 1 |
respiratory tract epithelium | 4.44e-10 | 19 |
lung epithelium | 4.44e-10 | 19 |
lung | 8.70e-09 | 22 |
respiratory tube | 8.70e-09 | 22 |
respiration organ | 8.70e-09 | 22 |
pair of lungs | 8.70e-09 | 22 |
lung primordium | 8.70e-09 | 22 |
lung bud | 8.70e-09 | 22 |
lower respiratory tract epithelium | 7.26e-08 | 3 |
epithelium of bronchus | 7.26e-08 | 3 |
respiratory system epithelium | 5.03e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 3.01e-40 | 2 |
somatostatinoma | 1.53e-21 | 1 |
paranasal sinus cancer | 2.30e-21 | 1 |
maxillary sinus cancer | 2.30e-21 | 1 |
lung small cell carcinoma | 5.72e-21 | 4 |
bronchus cancer | 2.00e-12 | 7 |
bronchogenic carcinoma | 2.00e-12 | 7 |
respiratory system cancer | 6.25e-12 | 16 |
lung carcinoma | 7.08e-10 | 9 |
carcinoma | 6.54e-09 | 106 |
cell type cancer | 1.62e-08 | 143 |