FFCP PHASE1:Hg19::chr1:121485374..121485399,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:121485374..121485399,- | |||
|coexpression_cluster_id=C319 | |coexpression_cluster_id=C319 | ||
|description=CAGE_peak_at_chr1:121485374..121485399,- | |description=CAGE_peak_at_chr1:121485374..121485399,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000453!5.25e-08!5;CL:0002274!4.81e-07!5;CL:0000457!4.81e-07!5;CL:0002191!4.81e-07!5;CL:0000097!4.81e-07!5;CL:0000831!4.81e-07!5;CL:0002028!4.81e-07!5 | |ontology_enrichment_celltype=CL:0000453!5.25e-08!5;CL:0002274!4.81e-07!5;CL:0000457!4.81e-07!5;CL:0002191!4.81e-07!5;CL:0000097!4.81e-07!5;CL:0000831!4.81e-07!5;CL:0002028!4.81e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000453;3.45e-25;5!CL:0000990;6.72e-14;8!CL:0000451;2.53e-11;10!CL:0001014;2.86e-11;2!CL:0001016;2.86e-11;2!CL:0000047;4.08e-11;2!CL:0000097;1.28e-09;5!CL:0000214;2.84e-07;3 | |ontology_enrichment_celltype_v019=CL:0000453;3.45e-25;5!CL:0000990;6.72e-14;8!CL:0000451;2.53e-11;10!CL:0001014;2.86e-11;2!CL:0001016;2.86e-11;2!CL:0000047;4.08e-11;2!CL:0000097;1.28e-09;5!CL:0000214;2.84e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000453,2.99e-25,5;CL:0000990,6.22e-14,8;CL:0000451,2.37e-11,10;CL:0001014,2.46e-11,2;CL:0001016,2.46e-11,2;CL:0000047,2.48e-10,8;CL:0000097,1.02e-09,5;CL:0002028,1.02e-09,5;CL:0000214,2.59e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.20e-07;3!UBERON:0000946;1.20e-07;3!UBERON:0006915;2.84e-07;3!UBERON:0007616;2.84e-07;3!UBERON:0002217;2.84e-07;3!UBERON:0002018;2.84e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003978;1.20e-07;3!UBERON:0000946;1.20e-07;3!UBERON:0006915;2.84e-07;3!UBERON:0007616;2.84e-07;3!UBERON:0002217;2.84e-07;3!UBERON:0002018;2.84e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,1.10e-07,3;UBERON:0009751,1.10e-07,3;UBERON:0000946,1.10e-07,3;UBERON:0002523,1.10e-07,3;UBERON:0005983,1.10e-07,3;UBERON:0002165,1.10e-07,3;UBERON:0002062,1.10e-07,3;UBERON:0007280,1.10e-07,3;UBERON:0006915,2.59e-07,3;UBERON:0007616,2.59e-07,3;UBERON:0002217,2.59e-07,3;UBERON:0002018,2.59e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7673845816344,0,0,0.211255286311942,1.27562579979026,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.19891667719909,0,0,1.09227722252426,1.77901850772711,0,0.800791974072025,0,0,0,0,0,0,0,0,0,0,0,0,0.501559486172034,0.32592226663359,0.473447805734733,0,0,0,0.221533894583621,1.35401931882508,0,0,0,0,0,0.593146252648242,1.60524496853828,0,0.113309342697566,0,0.68725489096526,2.27717722817553,0,1.95325036156926,0.950452044448374,0,0.511946444617674,0,0.473554504088034,0,0,0,0,0,0,0,0.722878304769133,0,0.579386075843295,0,1.94653948121054,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,1.68203280042692,0,0,0,0,0,0.151357427644931,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0.757301322732344,0,0.323292113637624,0,0.302256294682921,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,3.54473944008842,0,0,1.20097467208968,0.109750285408626,0,0.100528972411631,0,0,0,0,1.04337364477569,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.141775097242386,0.179117045405697,0.581267877027924,0,3.4486426652716,0.352193736052904,3.52457796419313,1.8735593944205,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,2.00169191121407,0,0,0.65147236858747,0.710783897485092,0,0,0,0,0,0,6.32501818449095,0,0,0,0,0,0,0.112085143993527,0,0,0,1.01637849688985,9.10978977003352,0.773288812777695,3.01529277601828,5.10351001322531,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0.664225598535437,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0.532685175939381,0.246381468041427,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0.657779629937804,0,0.769350375349168,0,0,0,0,0.660075999364704,0,0,0,0.580024309752732,0,0,0,0,0,0,0,0,0,1.40373983744043,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,0,0,0,1.47775344708365,1.31717957183961,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0.957526850661834,0,0,0.561594356226918,0.228234679033192,0,5.01268954180134,0.338583555603207,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,2.06846023944879,0,0,0,0,0,0.442317039724898,0,0,0.10893846351899,0.139423744278603,0,0,0.23056390438806,0,0,0,0.457987967009312,0,0,0.31396051279005,1.16348177330109,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.300646838828985,0.311064574191741,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0.209205692624666,0,0,0,0,0,0,0,0,1.3749625440701,6.46085722119133,0,0,0,0,0,1.16495949527454,0,0,0,0,0.0846733320657845,0,0.136203406111576,0,0,0.415440338029185,2.92466059016951,4.6428117273477,0,0,0,0,0.105600336519406,0.35857467866569,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0.573409195690071,0,0,0,0,0,0,0,0.936669811613763,0,0.149254802886874,0.233713309847224,0,0.568209015825267,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.276516872303462,5.84580926518165,1.32864840313363,2.12635012532597,0.655219697692825,0,0,0,0,0,0.567515953566836,0,0,0,0,0.107824811396682,0.314531883711793,0,0.169732529954025,0.212574920101683,0.247871528518004,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.322951291263702,8.56616521554926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0.227662191351298,0,0.460935950223117,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0.111855431797792,0,0.121917924982269,2.58971534875158,0,0,0,0,0.994753875806841,0,0,0.219881033490858,0.150962843566674,0,0,0,0.245148321753905,0,0.392616934229891,0,0,0.169927114687817,0.0939839179798536,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7673845816344,0,0,0.211255286311942,1.27562579979026,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.19891667719909,0,0,1.09227722252426,1.77901850772711,0,0.800791974072025,0,0,0,0,0,0,0,0,0,0,0,0,0.501559486172034,0.32592226663359,0.473447805734733,0,0,0,0.221533894583621,1.35401931882508,0,0,0,0,0,0.593146252648242,1.60524496853828,0,0.113309342697566,0,0.68725489096526,2.27717722817553,0,1.95325036156926,0.950452044448374,0,0.511946444617674,0,0.473554504088034,0,0,0,0,0,0,0,0.722878304769133,0,0.579386075843295,0,1.94653948121054,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,1.68203280042692,0,0,0,0,0,0.151357427644931,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0.757301322732344,0,0.323292113637624,0,0.302256294682921,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,3.54473944008842,0,0,1.20097467208968,0.109750285408626,0,0.100528972411631,0,0,0,0,1.04337364477569,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.141775097242386,0.179117045405697,0.581267877027924,0,3.4486426652716,0.352193736052904,3.52457796419313,1.8735593944205,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,2.00169191121407,0,0,0.65147236858747,0.710783897485092,0,0,0,0,0,0,6.32501818449095,0,0,0,0,0,0,0.112085143993527,0,0,0,1.01637849688985,9.10978977003352,0.773288812777695,3.01529277601828,5.10351001322531,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0.664225598535437,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0.532685175939381,0.246381468041427,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0.657779629937804,0,0.769350375349168,0,0,0,0,0.660075999364704,0,0,0,0.580024309752732,0,0,0,0,0,0,0,0,0,1.40373983744043,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,0,0,0,1.47775344708365,1.31717957183961,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0.957526850661834,0,0,0.561594356226918,0.228234679033192,0,5.01268954180134,0.338583555603207,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,2.06846023944879,0,0,0,0,0,0.442317039724898,0,0,0.10893846351899,0.139423744278603,0,0,0.23056390438806,0,0,0,0.457987967009312,0,0,0.31396051279005,1.16348177330109,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.300646838828985,0.311064574191741,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0.209205692624666,0,0,0,0,0,0,0,0,1.3749625440701,6.46085722119133,0,0,0,0,0,1.16495949527454,0,0,0,0,0.0846733320657845,0,0.136203406111576,0,0,0.415440338029185,2.92466059016951,4.6428117273477,0,0,0,0,0.105600336519406,0.35857467866569,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0.573409195690071,0,0,0,0,0,0,0,0.936669811613763,0,0.149254802886874,0.233713309847224,0,0.568209015825267,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.276516872303462,5.84580926518165,1.32864840313363,2.12635012532597,0.655219697692825,0,0,0,0,0,0.567515953566836,0,0,0,0,0.107824811396682,0.314531883711793,0,0.169732529954025,0.212574920101683,0.247871528518004,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.322951291263702,8.56616521554926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0.227662191351298,0,0.460935950223117,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0.111855431797792,0,0.121917924982269,2.58971534875158,0,0,0,0,0.994753875806841,0,0,0.219881033490858,0.150962843566674,0,0,0,0.245148321753905,0,0.392616934229891,0,0,0.169927114687817,0.0939839179798536,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p@chr1:121485374..121485399,- | |short_description=p@chr1:121485374..121485399,- | ||
}} | }} |
Latest revision as of 20:23, 27 July 2015
Short description: | p@chr1:121485374..121485399, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:121485374..121485399, - |
Coexpression cluster: | C319_CD14_Neural_Hepatocyte_Neurons_optic_heart_migratory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 2.99e-25 | 5 |
conventional dendritic cell | 6.22e-14 | 8 |
dendritic cell | 2.37e-11 | 10 |
CD1a-positive Langerhans cell | 2.46e-11 | 2 |
immature CD1a-positive Langerhans cell | 2.46e-11 | 2 |
neuronal stem cell | 2.48e-10 | 8 |
mast cell | 1.02e-09 | 5 |
basophil mast progenitor cell | 1.02e-09 | 5 |
synovial cell | 2.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
valve | 1.10e-07 | 3 |
cardiac mesenchyme | 1.10e-07 | 3 |
cardial valve | 1.10e-07 | 3 |
tunica intima | 1.10e-07 | 3 |
heart layer | 1.10e-07 | 3 |
endocardium | 1.10e-07 | 3 |
endocardial cushion | 1.10e-07 | 3 |
presumptive endocardium | 1.10e-07 | 3 |
stratified squamous epithelium | 2.59e-07 | 3 |
layer of synovial tissue | 2.59e-07 | 3 |
synovial joint | 2.59e-07 | 3 |
synovial membrane of synovial joint | 2.59e-07 | 3 |