FFCP PHASE1:Hg19::chr19:55667599..55667638,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:55667599..55667638,- | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_at_chr19:55667599..55667638,- | |description=CAGE_peak_at_chr19:55667599..55667638,- | ||
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|ontology_enrichment_celltype=CL:0000540!1.48e-12!6;CL:0000031!1.48e-12!6;CL:0000404!1.48e-12!6;CL:0000047!1.91e-09!8;CL:0002149!1.88e-07!6;CL:0002255!1.88e-07!6 | |ontology_enrichment_celltype=CL:0000540!1.48e-12!6;CL:0000031!1.48e-12!6;CL:0000404!1.48e-12!6;CL:0000047!1.91e-09!8;CL:0002149!1.88e-07!6;CL:0002255!1.88e-07!6 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010227;1.18e-19;1!UBERON:0010226;1.18e-19;1!UBERON:0000358;2.47e-19;1!UBERON:0004140;3.91e-19;1!UBERON:0005062;4.49e-19;4!UBERON:0007284;4.49e-19;4!UBERON:0006603;7.91e-07;65 | |ontology_enrichment_development_v019=UBERON:0010227;1.18e-19;1!UBERON:0010226;1.18e-19;1!UBERON:0000358;2.47e-19;1!UBERON:0004140;3.91e-19;1!UBERON:0005062;4.49e-19;4!UBERON:0007284;4.49e-19;4!UBERON:0006603;7.91e-07;65 | ||
|ontology_enrichment_disease=DOID:114!3.30e-11!2;DOID:3001!1.88e-07!6 | |ontology_enrichment_disease=DOID:114!3.30e-11!2;DOID:3001!1.88e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:114;3.94e-37;2!DOID:178;3.25e-19;1!DOID:326;3.25e-19;1!DOID:3978;3.25e-19;1!DOID:3394;3.25e-19;1!DOID:5844;3.25e-19;1!DOID:1287;3.92e-19;4 | |ontology_enrichment_disease_v019=DOID:114;3.94e-37;2!DOID:178;3.25e-19;1!DOID:326;3.25e-19;1!DOID:3978;3.25e-19;1!DOID:3394;3.25e-19;1!DOID:5844;3.25e-19;1!DOID:1287;3.92e-19;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,3.94e-37,2;DOID:178,3.25e-19,1;DOID:326,3.25e-19,1;DOID:3978,3.25e-19,1;DOID:3394,3.25e-19,1;DOID:5844,3.25e-19,1;DOID:1287,3.92e-19,4 | |||
|ontology_enrichment_uberon=UBERON:0004151!7.56e-16!3;UBERON:0003978!1.01e-15!3;UBERON:0009751!1.01e-15!3;UBERON:0000946!1.01e-15!3;UBERON:0002523!1.01e-15!3;UBERON:0005983!1.01e-15!3;UBERON:0002165!1.01e-15!3;UBERON:0002062!1.01e-15!3;UBERON:0007280!1.01e-15!3;UBERON:0007100!1.44e-13!27;UBERON:0002081!4.43e-11!2;UBERON:0002133!5.66e-11!2;UBERON:0000948!5.70e-07!24;UBERON:0005498!5.70e-07!24;UBERON:0004140!5.70e-07!24;UBERON:0009881!5.70e-07!24;UBERON:0004141!5.70e-07!24;UBERON:0003084!5.70e-07!24;UBERON:0007005!5.70e-07!24;UBERON:0004139!5.70e-07!24;UBERON:0004291!5.70e-07!24 | |ontology_enrichment_uberon=UBERON:0004151!7.56e-16!3;UBERON:0003978!1.01e-15!3;UBERON:0009751!1.01e-15!3;UBERON:0000946!1.01e-15!3;UBERON:0002523!1.01e-15!3;UBERON:0005983!1.01e-15!3;UBERON:0002165!1.01e-15!3;UBERON:0002062!1.01e-15!3;UBERON:0007280!1.01e-15!3;UBERON:0007100!1.44e-13!27;UBERON:0002081!4.43e-11!2;UBERON:0002133!5.66e-11!2;UBERON:0000948!5.70e-07!24;UBERON:0005498!5.70e-07!24;UBERON:0004140!5.70e-07!24;UBERON:0009881!5.70e-07!24;UBERON:0004141!5.70e-07!24;UBERON:0003084!5.70e-07!24;UBERON:0007005!5.70e-07!24;UBERON:0004139!5.70e-07!24;UBERON:0004291!5.70e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.04e-45;25!UBERON:0004151;2.34e-25;3!UBERON:0003978;4.58e-25;3!UBERON:0000946;4.58e-25;3!UBERON:0000948;1.13e-20;22!UBERON:0002084;1.18e-19;1!UBERON:0002079;1.18e-19;1!UBERON:0002082;1.18e-19;1!UBERON:0002146;1.56e-19;1!UBERON:0005623;1.56e-19;1!UBERON:0002135;2.47e-19;1!UBERON:0002081;1.64e-10;2!UBERON:0002133;2.37e-10;2!UBERON:0003103;3.61e-09;61!UBERON:0010313;3.31e-08;10 | |ontology_enrichment_uberon_v019=UBERON:0007100;1.04e-45;25!UBERON:0004151;2.34e-25;3!UBERON:0003978;4.58e-25;3!UBERON:0000946;4.58e-25;3!UBERON:0000948;1.13e-20;22!UBERON:0002084;1.18e-19;1!UBERON:0002079;1.18e-19;1!UBERON:0002082;1.18e-19;1!UBERON:0002146;1.56e-19;1!UBERON:0005623;1.56e-19;1!UBERON:0002135;2.47e-19;1!UBERON:0002081;1.64e-10;2!UBERON:0002133;2.37e-10;2!UBERON:0003103;3.61e-09;61!UBERON:0010313;3.31e-08;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,2.67e-42,27;UBERON:0004151,2.34e-25,3;UBERON:0003978,4.87e-25,3;UBERON:0009751,4.87e-25,3;UBERON:0000946,4.87e-25,3;UBERON:0002523,4.87e-25,3;UBERON:0005983,4.87e-25,3;UBERON:0002165,4.87e-25,3;UBERON:0002062,4.87e-25,3;UBERON:0007280,4.87e-25,3;UBERON:0002079,1.08e-19,1;UBERON:0002084,1.30e-19,1;UBERON:0002082,1.30e-19,1;UBERON:0010226,1.30e-19,1;UBERON:0002146,1.56e-19,1;UBERON:0005623,1.56e-19,1;UBERON:0002135,2.71e-19,1;UBERON:0000948,5.85e-19,24;UBERON:0005498,5.85e-19,24;UBERON:0004140,5.85e-19,24;UBERON:0009881,5.85e-19,24;UBERON:0004141,5.85e-19,24;UBERON:0003084,5.85e-19,24;UBERON:0007005,5.85e-19,24;UBERON:0004139,5.85e-19,24;UBERON:0004291,5.85e-19,24;UBERON:0003103,1.32e-16,68;UBERON:0004797,2.55e-11,7;UBERON:0002081,1.57e-10,2;UBERON:0010227,1.57e-10,2;UBERON:0002133,2.49e-10,2;UBERON:0001009,6.75e-10,112;UBERON:0010313,3.37e-08,10;UBERON:0002342,3.37e-08,10;UBERON:0005062,3.37e-08,10;UBERON:0007023,1.77e-07,114 | |||
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|short_description=p@chr19:55667599..55667638,- | |short_description=p@chr19:55667599..55667638,- | ||
}} | }} |
Latest revision as of 17:22, 27 July 2015
Short description: | p@chr19:55667599..55667638, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55667599..55667638, - |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 2.67e-42 | 27 |
cardiac chamber | 2.34e-25 | 3 |
valve | 4.87e-25 | 3 |
cardiac mesenchyme | 4.87e-25 | 3 |
cardial valve | 4.87e-25 | 3 |
tunica intima | 4.87e-25 | 3 |
heart layer | 4.87e-25 | 3 |
endocardium | 4.87e-25 | 3 |
endocardial cushion | 4.87e-25 | 3 |
presumptive endocardium | 4.87e-25 | 3 |
left cardiac atrium | 1.08e-19 | 1 |
heart left ventricle | 1.30e-19 | 1 |
cardiac ventricle | 1.30e-19 | 1 |
future cardiac ventricle | 1.30e-19 | 1 |
pulmonary valve | 1.56e-19 | 1 |
semi-lunar valve | 1.56e-19 | 1 |
mitral valve | 2.71e-19 | 1 |
heart | 5.85e-19 | 24 |
primitive heart tube | 5.85e-19 | 24 |
primary heart field | 5.85e-19 | 24 |
anterior lateral plate mesoderm | 5.85e-19 | 24 |
heart tube | 5.85e-19 | 24 |
heart primordium | 5.85e-19 | 24 |
cardiac mesoderm | 5.85e-19 | 24 |
cardiogenic plate | 5.85e-19 | 24 |
heart rudiment | 5.85e-19 | 24 |
compound organ | 1.32e-16 | 68 |
blood vessel layer | 2.55e-11 | 7 |
cardiac atrium | 1.57e-10 | 2 |
future cardiac atrium | 1.57e-10 | 2 |
atrioventricular valve | 2.49e-10 | 2 |
circulatory system | 6.75e-10 | 112 |
neural crest-derived structure | 3.37e-08 | 10 |
neural crest | 3.37e-08 | 10 |
neural fold | 3.37e-08 | 10 |
adult organism | 1.77e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.94e-37 | 2 |
vascular disease | 3.25e-19 | 1 |
ischemia | 3.25e-19 | 1 |
extrinsic cardiomyopathy | 3.25e-19 | 1 |
myocardial ischemia | 3.25e-19 | 1 |
myocardial infarction | 3.25e-19 | 1 |
cardiovascular system disease | 3.92e-19 | 4 |