FFCP PHASE1:Hg19::chr19:55666122..55666150,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:55666122..55666150,+ | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_at_chr19:55666122..55666150,+ | |description=CAGE_peak_at_chr19:55666122..55666150,+ | ||
|id=chr19:55666122..55666150,+ | |id=chr19:55666122..55666150,+ | ||
|ontology_enrichment_celltype=CL:0002322!8.45e-13!5;CL:0000082!6.77e-09!19 | |ontology_enrichment_celltype=CL:0002322!8.45e-13!5;CL:0000082!6.77e-09!19 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.86e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,2.02e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0010227;3.75e-18;1!UBERON:0010226;4.44e-18;1!UBERON:0004140;5.26e-18;1!UBERON:0000358;1.03e-17;1!UBERON:0005062;1.86e-17;4!UBERON:0007284;1.86e-17;4 | |||
|ontology_enrichment_disease=DOID:0050687!5.82e-12!143;DOID:305!4.57e-10!106;DOID:1324!3.33e-09!15;DOID:0050615!1.53e-08!16;DOID:162!1.01e-07!235;DOID:14566!2.28e-07!239;DOID:114!6.45e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:114;2.59e-34;2!DOID:178;6.23e-18;1!DOID:326;6.23e-18;1!DOID:3978;6.23e-18;1!DOID:3394;6.23e-18;1!DOID:5844;6.23e-18;1!DOID:1287;1.03e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.59e-34,2;DOID:178,6.23e-18,1;DOID:326,6.23e-18,1;DOID:3978,6.23e-18,1;DOID:3394,6.23e-18,1;DOID:5844,6.23e-18,1;DOID:1287,1.03e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0005157!1.70e-11!51;UBERON:0005153!9.69e-10!37;UBERON:0002048!2.18e-09!22;UBERON:0000117!2.18e-09!22;UBERON:0000171!2.18e-09!22;UBERON:0000170!2.18e-09!22;UBERON:0005597!2.18e-09!22;UBERON:0000118!2.18e-09!22;UBERON:0004151!2.29e-09!3;UBERON:0003978!2.84e-09!3;UBERON:0009751!2.84e-09!3;UBERON:0000946!2.84e-09!3;UBERON:0002523!2.84e-09!3;UBERON:0005983!2.84e-09!3;UBERON:0002165!2.84e-09!3;UBERON:0002062!2.84e-09!3;UBERON:0007280!2.84e-09!3;UBERON:0004802!6.77e-09!19;UBERON:0000115!6.77e-09!19;UBERON:0005178!4.29e-08!34;UBERON:0002224!4.29e-08!34;UBERON:0005181!8.68e-08!35;UBERON:0007100!5.68e-07!27;UBERON:0008947!5.71e-07!38;UBERON:0003258!5.71e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.60e-42;25!UBERON:0004151;2.63e-23;3!UBERON:0003978;6.44e-23;3!UBERON:0000946;6.44e-23;3!UBERON:0000948;6.01e-19;22!UBERON:0002079;3.75e-18;1!UBERON:0002084;4.44e-18;1!UBERON:0002082;4.44e-18;1!UBERON:0002146;7.37e-18;1!UBERON:0005623;7.37e-18;1!UBERON:0002135;8.72e-18;1!UBERON:0007029;1.44e-17;1!UBERON:0002081;9.46e-10;2!UBERON:0002133;1.44e-09;2!UBERON:0003103;1.83e-08;61!UBERON:0010313;1.52e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,7.60e-39,27;UBERON:0004151,2.63e-23,3;UBERON:0003978,6.44e-23,3;UBERON:0009751,6.44e-23,3;UBERON:0000946,6.44e-23,3;UBERON:0002523,6.44e-23,3;UBERON:0005983,6.44e-23,3;UBERON:0002165,6.44e-23,3;UBERON:0002062,6.44e-23,3;UBERON:0007280,6.44e-23,3;UBERON:0002079,3.75e-18,1;UBERON:0002084,4.44e-18,1;UBERON:0002082,4.44e-18,1;UBERON:0010226,4.44e-18,1;UBERON:0002146,7.37e-18,1;UBERON:0005623,7.37e-18,1;UBERON:0002135,8.72e-18,1;UBERON:0007029,1.22e-17,1;UBERON:0000948,2.22e-17,24;UBERON:0005498,2.22e-17,24;UBERON:0004140,2.22e-17,24;UBERON:0009881,2.22e-17,24;UBERON:0004141,2.22e-17,24;UBERON:0003084,2.22e-17,24;UBERON:0007005,2.22e-17,24;UBERON:0004139,2.22e-17,24;UBERON:0004291,2.22e-17,24;UBERON:0003103,3.68e-15,68;UBERON:0004797,2.14e-10,7;UBERON:0002081,9.46e-10,2;UBERON:0010227,9.46e-10,2;UBERON:0002133,1.44e-09,2;UBERON:0001009,5.65e-09,112;UBERON:0010313,1.52e-07,10;UBERON:0002342,1.52e-07,10;UBERON:0005062,1.52e-07,10;UBERON:0007023,9.13e-07,114 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.265059536642971,0.348581828608555,0.207322110030741,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359030577639089,0.217294743844016,0,0,0,0,0,0,0,0.392125068635479,0,0,0,0,0.163232808159148,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0.347119476670262,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,1.17330829640882,0,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,3.90995361781156,11.9163420486076,0.717873024576814,13.9775300349294,32.1919536102428,38.608662137444,15.6537490894072,0,0,0,0,0,0,0,0,0,0.803765742325096,0.687697182986169,0.415440338029185,0,0,0,0,0,0,0.105600336519406,0,0,22.1555551175744,17.8764831998667,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.171086837884329,0.704815022316672,0,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770479321629213,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.778619813244484,0,0,0.280272163313789,0,0,0.9555033757741,0,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,0,0,0,0,0,1.45713297917742,0.233939463462106,0.198950775161368,0.713520544665411,0,0.109940516745429,0.301925687133347,0,0.218559560503957,0.470317296361523,0,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0.534434810531121,0,1.25353769646188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99798106963804,0,0,0,0.179650404213174,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr19:55666122..55666150,+ | |short_description=p@chr19:55666122..55666150,+ | ||
}} | }} |
Latest revision as of 17:22, 27 July 2015
Short description: | p@chr19:55666122..55666150, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55666122..55666150, + |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 2.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 7.60e-39 | 27 |
cardiac chamber | 2.63e-23 | 3 |
valve | 6.44e-23 | 3 |
cardiac mesenchyme | 6.44e-23 | 3 |
cardial valve | 6.44e-23 | 3 |
tunica intima | 6.44e-23 | 3 |
heart layer | 6.44e-23 | 3 |
endocardium | 6.44e-23 | 3 |
endocardial cushion | 6.44e-23 | 3 |
presumptive endocardium | 6.44e-23 | 3 |
left cardiac atrium | 3.75e-18 | 1 |
heart left ventricle | 4.44e-18 | 1 |
cardiac ventricle | 4.44e-18 | 1 |
future cardiac ventricle | 4.44e-18 | 1 |
pulmonary valve | 7.37e-18 | 1 |
semi-lunar valve | 7.37e-18 | 1 |
mitral valve | 8.72e-18 | 1 |
surface | 1.22e-17 | 1 |
heart | 2.22e-17 | 24 |
primitive heart tube | 2.22e-17 | 24 |
primary heart field | 2.22e-17 | 24 |
anterior lateral plate mesoderm | 2.22e-17 | 24 |
heart tube | 2.22e-17 | 24 |
heart primordium | 2.22e-17 | 24 |
cardiac mesoderm | 2.22e-17 | 24 |
cardiogenic plate | 2.22e-17 | 24 |
heart rudiment | 2.22e-17 | 24 |
compound organ | 3.68e-15 | 68 |
blood vessel layer | 2.14e-10 | 7 |
cardiac atrium | 9.46e-10 | 2 |
future cardiac atrium | 9.46e-10 | 2 |
atrioventricular valve | 1.44e-09 | 2 |
circulatory system | 5.65e-09 | 112 |
neural crest-derived structure | 1.52e-07 | 10 |
neural crest | 1.52e-07 | 10 |
neural fold | 1.52e-07 | 10 |
adult organism | 9.13e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.59e-34 | 2 |
vascular disease | 6.23e-18 | 1 |
ischemia | 6.23e-18 | 1 |
extrinsic cardiomyopathy | 6.23e-18 | 1 |
myocardial ischemia | 6.23e-18 | 1 |
myocardial infarction | 6.23e-18 | 1 |
cardiovascular system disease | 1.03e-17 | 4 |