FFCP PHASE1:Hg19::chr19:49378898..49378909,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:49378898..49378909,+
|short_description=p@chr19:49378898..49378909,+
|description=CAGE_peak_at_chr19:49378898..49378909,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:49378898..49378909,+ | |||
|coexpression_cluster_id=C2495 | |||
|description=CAGE_peak_at_chr19:49378898..49378909,+ | |||
|id=chr19:49378898..49378909,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.72e-27!42;CL:0000766!2.29e-26!76;CL:0000557!5.50e-25!71;CL:0000860!1.49e-24!45;CL:0000738!6.55e-24!140;CL:0000839!1.04e-23!70;CL:0002009!2.69e-22!65;CL:0002031!1.13e-21!124;CL:0002194!1.67e-21!63;CL:0000576!1.67e-21!63;CL:0000040!1.67e-21!63;CL:0000559!1.67e-21!63;CL:0002087!3.79e-20!119;CL:0000037!4.33e-18!172;CL:0000566!4.33e-18!172;CL:0000988!2.73e-17!182;CL:0002032!2.30e-16!165;CL:0000837!2.30e-16!165;CL:0000763!6.42e-16!112;CL:0000049!6.42e-16!112 | |||
|ontology_enrichment_celltype_v019=CL:0002393;2.51e-30;6!CL:0002397;2.51e-30;6!CL:0000860;2.95e-20;33!CL:0002057;2.95e-20;33!CL:0000766;6.71e-18;69!CL:0000576;1.87e-17;48!CL:0000473;1.97e-15;39!CL:0000234;1.97e-15;39!CL:0002087;1.28e-08;104!CL:0000775;4.84e-08;3!CL:0000763;8.69e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.40e-37,42;CL:0002057,1.40e-37,42;CL:0000473,7.36e-33,48;CL:0000234,7.36e-33,48;CL:0000766,1.14e-26,72;CL:0002194,3.04e-26,59;CL:0000576,3.04e-26,59;CL:0000040,3.04e-26,59;CL:0000559,3.04e-26,59;CL:0002009,2.18e-25,61;CL:0000839,1.79e-23,66;CL:0000557,4.00e-23,67;CL:0002393,1.98e-20,9;CL:0002397,1.98e-20,9;CL:0000763,9.38e-18,108;CL:0000049,9.38e-18,108;CL:0000738,4.83e-14,136;CL:0002087,2.08e-13,115;CL:0002031,7.74e-13,120;CL:0002032,8.36e-12,161;CL:0000837,8.36e-12,161;CL:0000037,2.70e-11,168;CL:0000988,1.07e-10,177;CL:0000775,4.52e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.62e-24;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!1.56e-23!86;UBERON:0002371!9.40e-23!80;UBERON:0002390!7.44e-21!102;UBERON:0003061!7.44e-21!102;UBERON:0004765!1.45e-18!101;UBERON:0001434!1.45e-18!101;UBERON:0002193!4.55e-18!112;UBERON:0002405!4.91e-13!115;UBERON:0002204!5.92e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.18e-20,76;UBERON:0001474,6.86e-19,82;UBERON:0004765,3.36e-17,90;UBERON:0002405,1.22e-16,93;UBERON:0002390,8.84e-16,98;UBERON:0003061,8.84e-16,98;UBERON:0001434,1.85e-15,100;UBERON:0002193,2.69e-14,108;UBERON:0002204,4.12e-09,167;UBERON:0003081,2.10e-07,203 | |||
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| ||
|short_description=p@chr19:49378898..49378909,+ | |||
}} | }} |
Latest revision as of 15:54, 27 July 2015
Short description: | p@chr19:49378898..49378909, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49378898..49378909, + |
Coexpression cluster: | C2495_Neutrophils_CD14_Eosinophils_immature_Natural_CD8_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.40e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.40e-37 | 42 |
defensive cell | 7.36e-33 | 48 |
phagocyte | 7.36e-33 | 48 |
myeloid leukocyte | 1.14e-26 | 72 |
monopoietic cell | 3.04e-26 | 59 |
monocyte | 3.04e-26 | 59 |
monoblast | 3.04e-26 | 59 |
promonocyte | 3.04e-26 | 59 |
macrophage dendritic cell progenitor | 2.18e-25 | 61 |
myeloid lineage restricted progenitor cell | 1.79e-23 | 66 |
granulocyte monocyte progenitor cell | 4.00e-23 | 67 |
intermediate monocyte | 1.98e-20 | 9 |
CD14-positive, CD16-positive monocyte | 1.98e-20 | 9 |
myeloid cell | 9.38e-18 | 108 |
common myeloid progenitor | 9.38e-18 | 108 |
leukocyte | 4.83e-14 | 136 |
nongranular leukocyte | 2.08e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 7.74e-13 | 120 |
hematopoietic oligopotent progenitor cell | 8.36e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.36e-12 | 161 |
hematopoietic stem cell | 2.70e-11 | 168 |
hematopoietic cell | 1.07e-10 | 177 |
neutrophil | 4.52e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.18e-20 | 76 |
bone element | 6.86e-19 | 82 |
skeletal element | 3.36e-17 | 90 |
immune system | 1.22e-16 | 93 |
hematopoietic system | 8.84e-16 | 98 |
blood island | 8.84e-16 | 98 |
skeletal system | 1.85e-15 | 100 |
hemolymphoid system | 2.69e-14 | 108 |
musculoskeletal system | 4.12e-09 | 167 |
lateral plate mesoderm | 2.10e-07 | 203 |