FFCP PHASE1:Hg19::chr19:47113473..47113571,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:47113473..47113571,+
|short_description=p@chr19:47113473..47113571,+
|description=CAGE_peak_at_chr19:47113473..47113571,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:47113473..47113571,+ | |||
|coexpression_cluster_id=C1456 | |||
|description=CAGE_peak_at_chr19:47113473..47113571,+ | |||
|id=chr19:47113473..47113571,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.27e-19!57;UBERON:0005068!2.27e-19!57;UBERON:0006241!2.27e-19!57;UBERON:0007135!2.27e-19!57;UBERON:0002616!3.06e-17!59;UBERON:0001869!3.21e-17!32;UBERON:0002020!7.41e-17!34;UBERON:0003528!7.41e-17!34;UBERON:0001893!4.78e-16!34;UBERON:0001017!1.06e-15!82;UBERON:0002791!1.63e-15!33;UBERON:0002780!2.31e-15!41;UBERON:0001890!2.31e-15!41;UBERON:0006240!2.31e-15!41;UBERON:0005743!2.63e-15!86;UBERON:0002619!3.12e-15!22;UBERON:0003080!3.21e-15!42;UBERON:0000956!5.95e-14!25;UBERON:0000203!5.95e-14!25;UBERON:0000955!6.01e-14!69;UBERON:0006238!6.01e-14!69;UBERON:0001950!6.02e-14!20;UBERON:0007023!1.10e-13!115;UBERON:0003075!2.92e-13!86;UBERON:0007284!2.92e-13!86;UBERON:0002346!4.66e-12!90;UBERON:0000073!1.46e-11!94;UBERON:0001016!1.46e-11!94;UBERON:0000119!9.47e-11!312;UBERON:0003056!1.18e-10!61;UBERON:0000025!1.34e-10!194;UBERON:0000483!1.40e-10!309;UBERON:0004111!1.74e-09!241;UBERON:0000477!2.27e-09!286;UBERON:0000475!9.77e-09!365;UBERON:0000033!2.58e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;8.23e-16;32!UBERON:0002619;8.47e-16;22!UBERON:0003528;2.97e-15;34!UBERON:0002020;2.97e-15;34!UBERON:0002791;7.63e-15;32!UBERON:0001893;1.47e-14;34!UBERON:0001950;1.84e-14;20!UBERON:0000956;5.05e-14;25!UBERON:0000203;5.05e-14;25!UBERON:0002780;1.48e-11;41!UBERON:0001890;1.48e-11;41!UBERON:0000073;1.02e-10;53!UBERON:0002616;1.02e-10;53!UBERON:0001017;3.79e-07;75!UBERON:0000955;4.29e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.18e-19,53;UBERON:0002616,1.18e-19,53;UBERON:0001049,1.62e-19,56;UBERON:0005068,1.62e-19,56;UBERON:0006241,1.62e-19,56;UBERON:0007135,1.62e-19,56;UBERON:0001869,2.00e-17,32;UBERON:0003528,4.63e-17,34;UBERON:0002020,4.63e-17,34;UBERON:0001893,3.11e-16,34;UBERON:0002791,5.44e-16,32;UBERON:0001017,1.12e-15,81;UBERON:0002619,1.35e-15,22;UBERON:0002780,1.81e-15,41;UBERON:0001890,1.81e-15,41;UBERON:0003080,1.81e-15,41;UBERON:0006240,1.81e-15,41;UBERON:0003075,4.94e-15,82;UBERON:0007284,4.94e-15,82;UBERON:0001950,2.82e-14,20;UBERON:0000956,4.53e-14,25;UBERON:0000203,4.53e-14,25;UBERON:0000955,7.42e-14,68;UBERON:0006238,7.42e-14,68;UBERON:0002346,9.48e-14,86;UBERON:0007023,1.95e-13,114;UBERON:0010371,1.86e-12,104;UBERON:0000119,6.60e-12,309;UBERON:0001016,6.73e-12,89;UBERON:0000483,9.97e-12,306;UBERON:0003056,2.13e-11,61;UBERON:0000025,1.14e-10,192;UBERON:0004111,4.82e-10,240;UBERON:0010314,1.28e-09,132 | |||
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| ||
|short_description=p@chr19:47113473..47113571,+ | |||
}} | }} |
Latest revision as of 15:19, 27 July 2015
Short description: | p@chr19:47113473..47113571, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:47113473..47113571, + |
Coexpression cluster: | C1456_medial_amygdala_brain_hippocampus_occipital_putamen_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.18e-19 | 53 |
regional part of brain | 1.18e-19 | 53 |
neural tube | 1.62e-19 | 56 |
neural rod | 1.62e-19 | 56 |
future spinal cord | 1.62e-19 | 56 |
neural keel | 1.62e-19 | 56 |
cerebral hemisphere | 2.00e-17 | 32 |
brain grey matter | 4.63e-17 | 34 |
gray matter | 4.63e-17 | 34 |
telencephalon | 3.11e-16 | 34 |
regional part of telencephalon | 5.44e-16 | 32 |
central nervous system | 1.12e-15 | 81 |
regional part of cerebral cortex | 1.35e-15 | 22 |
regional part of forebrain | 1.81e-15 | 41 |
forebrain | 1.81e-15 | 41 |
anterior neural tube | 1.81e-15 | 41 |
future forebrain | 1.81e-15 | 41 |
neural plate | 4.94e-15 | 82 |
presumptive neural plate | 4.94e-15 | 82 |
neocortex | 2.82e-14 | 20 |
cerebral cortex | 4.53e-14 | 25 |
pallium | 4.53e-14 | 25 |
brain | 7.42e-14 | 68 |
future brain | 7.42e-14 | 68 |
neurectoderm | 9.48e-14 | 86 |
adult organism | 1.95e-13 | 114 |
ecto-epithelium | 1.86e-12 | 104 |
cell layer | 6.60e-12 | 309 |
nervous system | 6.73e-12 | 89 |
epithelium | 9.97e-12 | 306 |
pre-chordal neural plate | 2.13e-11 | 61 |
tube | 1.14e-10 | 192 |
anatomical conduit | 4.82e-10 | 240 |
structure with developmental contribution from neural crest | 1.28e-09 | 132 |