FFCP PHASE1:Hg19::chr19:45221919..45221937,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:45221919..45221937,- | |||
|description=CAGE_peak_at_chr19:45221919..45221937,- | |description=CAGE_peak_at_chr19:45221919..45221937,- | ||
|id=chr19:45221919..45221937,- | |id=chr19:45221919..45221937,- | ||
|ontology_enrichment_celltype=CL:0002139!5.37e-31!24;CL:0000115!1.27e-21!35;CL:0000071!1.07e-19!18;CL:0002546!1.07e-19!18;CL:0002078!5.55e-16!44;CL:0005020!1.38e-13!6;CL:0002138!1.38e-13!6;CL:0005022!1.38e-13!6;CL:0000213!1.75e-12!57;CL:0000215!1.75e-12!57;CL:0002543!3.24e-10!6;CL:1000413!8.56e-09!9;CL:0002618!5.80e-08!3 | |ontology_enrichment_celltype=CL:0002139!5.37e-31!24;CL:0000115!1.27e-21!35;CL:0000071!1.07e-19!18;CL:0002546!1.07e-19!18;CL:0002078!5.55e-16!44;CL:0005020!1.38e-13!6;CL:0002138!1.38e-13!6;CL:0005022!1.38e-13!6;CL:0000213!1.75e-12!57;CL:0000215!1.75e-12!57;CL:0002543!3.24e-10!6;CL:1000413!8.56e-09!9;CL:0002618!5.80e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000511;2.97e-19;1!CL:0002625;2.97e-19;1!CL:0000216;2.97e-19;1!CL:0000182;2.69e-14;12!CL:0002139;2.06e-07;24!CL:0002144;2.71e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.88e-19,1;CL:0002625,1.88e-19,1;CL:0000216,1.88e-19,1;CL:0000182,3.15e-14,12;CL:0002139,1.84e-07,24;CL:0002144,2.19e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.97e-19;1!UBERON:0004161;1.56e-15;11!UBERON:0009497;3.01e-13;13!UBERON:0001041;5.09e-10;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.07e-19!18;UBERON:0004638!1.07e-19!18;UBERON:0004852!1.07e-19!18;UBERON:0000487!3.27e-18!22;UBERON:0000477!4.02e-16!286;UBERON:0006914!1.51e-15!25;UBERON:0004111!5.33e-15!241;UBERON:0000025!6.80e-12!194;UBERON:0002465!4.07e-10!10;UBERON:0001473!5.78e-10!8;UBERON:0004536!5.78e-10!8;UBERON:0006558!5.78e-10!8;UBERON:0001009!1.18e-09!113;UBERON:0000055!3.42e-09!69;UBERON:0001638!4.41e-09!9;UBERON:0003920!4.41e-09!9;UBERON:0004582!4.41e-09!9;UBERON:0003915!8.56e-09!9;UBERON:0004700!8.56e-09!9;UBERON:0001917!8.56e-09!9;UBERON:0002049!3.04e-08!79;UBERON:0007798!3.04e-08!79;UBERON:0004872!4.21e-08!84;UBERON:0000467!7.01e-08!625;UBERON:0000480!7.80e-08!626;UBERON:0004535!1.19e-07!110;UBERON:0000468!1.85e-07!659;UBERON:0003914!1.85e-07!118;UBERON:0000483!1.90e-07!309;UBERON:0000119!2.96e-07!312;UBERON:0007023!4.71e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0007029;2.97e-19;1!UBERON:0002079;2.97e-19;1!UBERON:0001136;2.97e-19;1!UBERON:0001343;2.97e-19;1!UBERON:0004910;2.97e-19;1!UBERON:0004813;2.97e-19;1!UBERON:0002081;2.60e-10;2!UBERON:0004909;2.60e-10;2!UBERON:0002107;2.93e-09;19!UBERON:0006925;2.93e-09;19!UBERON:0000487;5.72e-08;22!UBERON:0010523;2.71e-07;3!UBERON:0004151;2.71e-07;3!UBERON:0001915;2.71e-07;3!UBERON:0001982;2.71e-07;3!UBERON:0002423;3.60e-07;25!UBERON:0006914;4.45e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.88e-19,1;UBERON:0001343,1.88e-19,1;UBERON:0004910,1.88e-19,1;UBERON:0005154,1.88e-19,1;UBERON:0005295,1.88e-19,1;UBERON:0004813,1.88e-19,1;UBERON:0005297,1.88e-19,1;UBERON:0005294,1.88e-19,1;UBERON:0010141,1.88e-19,1;UBERON:0005891,1.88e-19,1;UBERON:0007029,3.91e-19,1;UBERON:0002079,4.69e-19,1;UBERON:0004909,2.07e-10,2;UBERON:0002081,3.27e-10,2;UBERON:0010227,3.27e-10,2;UBERON:0002107,3.24e-09,19;UBERON:0006925,3.24e-09,19;UBERON:0008836,3.24e-09,19;UBERON:0000487,4.78e-08,22;UBERON:0008835,4.89e-08,22;UBERON:0003894,4.89e-08,22;UBERON:0009854,1.04e-07,23;UBERON:0010523,2.19e-07,3;UBERON:0001915,2.19e-07,3;UBERON:0001982,2.19e-07,3;UBERON:0004151,3.16e-07,3;UBERON:0006914,3.80e-07,25;UBERON:0007499,3.88e-07,25;UBERON:0009497,3.88e-07,25;UBERON:0000015,3.88e-07,25;UBERON:0002423,3.88e-07,25;UBERON:0006235,3.88e-07,25;UBERON:0004161,3.88e-07,25;UBERON:0009856,6.97e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.550236083880135,0.417989933073621,0.258416759169329,0.35576626268671,3.68192674041137,0,0.760272105718513,1.70843440283719,0.367663080345869,0,0.625098097988558,0.898117490504679,0.450445921933289,1.53316637465883,0,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.482022059766964,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0.680374821106063,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349839999984783,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0.407992870545287,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.134366944973453,0,0,2.44227865152393,1.31865373409866,2.08950985947973,0.393709926058995,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.242998226632099,0,0.0788057072991982,0.419636705079985,0.105600336519406,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0.258565912723101,0,0.171086837884329,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.465788870628778,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,1.50962843566674,0,0,0,0,0,0,0,0,0,0.375935671919414,0.386747327841463,0,0,0,0,1.46067277649303,0.458729283404541,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0.404234377916439,0,0,0.0673520530145875,0.143444410785353,0,0,0,0,0.269475606319761,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.550236083880135,0.417989933073621,0.258416759169329,0.35576626268671,3.68192674041137,0,0.760272105718513,1.70843440283719,0.367663080345869,0,0.625098097988558,0.898117490504679,0.450445921933289,1.53316637465883,0,0.916008719652036,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.482022059766964,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0.680374821106063,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349839999984783,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0.407992870545287,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.134366944973453,0,0,2.44227865152393,1.31865373409866,2.08950985947973,0.393709926058995,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.242998226632099,0,0.0788057072991982,0.419636705079985,0.105600336519406,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0.258565912723101,0,0.171086837884329,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.465788870628778,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,1.50962843566674,0,0,0,0,0,0,0,0,0,0.375935671919414,0.386747327841463,0,0,0,0,1.46067277649303,0.458729283404541,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0.404234377916439,0,0,0.0673520530145875,0.143444410785353,0,0,0,0,0.269475606319761,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p@chr19:45221919..45221937,- | |short_description=p@chr19:45221919..45221937,- | ||
}} | }} |
Latest revision as of 14:41, 27 July 2015
Short description: | p@chr19:45221919..45221937, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:45221919..45221937, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.88e-19 | 1 |
seminiferous tubule epithelial cell | 1.88e-19 | 1 |
Sertoli cell | 1.88e-19 | 1 |
hepatocyte | 3.15e-14 | 12 |
endothelial cell of vascular tree | 1.84e-07 | 24 |
capillary endothelial cell | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.88e-19 | 1 |
seminiferous tubule of testis | 1.88e-19 | 1 |
epithelium of male gonad | 1.88e-19 | 1 |
epithelial cord | 1.88e-19 | 1 |
sex cord | 1.88e-19 | 1 |
seminiferous tubule epithelium | 1.88e-19 | 1 |
testis sex cord | 1.88e-19 | 1 |
genital ridge | 1.88e-19 | 1 |
primitive sex cord of indifferent gonad | 1.88e-19 | 1 |
coelomic epithelium | 1.88e-19 | 1 |
surface | 3.91e-19 | 1 |
left cardiac atrium | 4.69e-19 | 1 |
epithelium of gonad | 2.07e-10 | 2 |
cardiac atrium | 3.27e-10 | 2 |
future cardiac atrium | 3.27e-10 | 2 |
liver | 3.24e-09 | 19 |
digestive gland | 3.24e-09 | 19 |
liver bud | 3.24e-09 | 19 |
simple squamous epithelium | 4.78e-08 | 22 |
hepatic diverticulum | 4.89e-08 | 22 |
liver primordium | 4.89e-08 | 22 |
digestive tract diverticulum | 1.04e-07 | 23 |
microcirculatory vessel | 2.19e-07 | 3 |
endothelium of capillary | 2.19e-07 | 3 |
capillary | 2.19e-07 | 3 |
cardiac chamber | 3.16e-07 | 3 |
squamous epithelium | 3.80e-07 | 25 |
epithelial sac | 3.88e-07 | 25 |
epithelium of foregut-midgut junction | 3.88e-07 | 25 |
anatomical boundary | 3.88e-07 | 25 |
hepatobiliary system | 3.88e-07 | 25 |
foregut-midgut junction | 3.88e-07 | 25 |
septum transversum | 3.88e-07 | 25 |
sac | 6.97e-07 | 26 |