FFCP PHASE1:Hg19::chr19:3562547..3562565,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:3562547..3562565,+ | |||
|coexpression_cluster_id=C170 | |||
|description=CAGE_peak_at_chr19:3562547..3562565,+ | |description=CAGE_peak_at_chr19:3562547..3562565,+ | ||
|id=chr19:3562547..3562565,+ | |id=chr19:3562547..3562565,+ | ||
|ontology_enrichment_celltype=CL:0002150!9.41e-14!3;CL:0000861!9.41e-14!3;CL:0002541!3.10e-12!3;CL:0000066!8.54e-12!254;CL:0000235!7.32e-07!10 | |ontology_enrichment_celltype=CL:0002150!9.41e-14!3;CL:0000861!9.41e-14!3;CL:0002541!3.10e-12!3;CL:0000066!8.54e-12!254;CL:0000235!7.32e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.12e-17;3!CL:0002202;8.85e-07;9!CL:0002632;8.85e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.36e-28!106;DOID:0050687!7.20e-24!143;DOID:162!6.03e-19!235;DOID:14566!2.32e-18!239;DOID:3908!1.26e-12!5;DOID:3910!3.76e-09!2;DOID:4362!1.45e-07!5;DOID:3905!4.86e-07!9;DOID:1749!6.91e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3910;9.18e-26;2!DOID:3908;3.60e-11;5!DOID:1325;2.35e-08;7!DOID:3904;2.35e-08;7!DOID:3905;8.85e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,9.18e-26,2;DOID:3908,3.60e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:305,2.62e-08,106;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.24e-15!9;UBERON:0000476!3.10e-12!3;UBERON:0000920!3.10e-12!3;UBERON:0008947!4.64e-10!38;UBERON:0003258!4.64e-10!38;UBERON:0000072!1.65e-09!46;UBERON:0003124!3.52e-09!7;UBERON:0001557!3.75e-09!19;UBERON:0004903!3.76e-09!2;UBERON:0002173!3.76e-09!2;UBERON:0002186!3.76e-09!2;UBERON:0000065!6.19e-08!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;9.18e-26;2!UBERON:0002173;9.18e-26;2!UBERON:0002186;9.18e-26;2!UBERON:0004821;1.12e-17;3!UBERON:0007499;1.12e-17;3!UBERON:0003215;1.12e-17;3!UBERON:0010368;1.12e-17;3!UBERON:0009911;1.12e-17;3!UBERON:0002299;1.12e-17;3!UBERON:0006524;1.12e-17;3!UBERON:0008874;1.12e-17;3!UBERON:0002169;1.12e-17;3!UBERON:0004894;1.12e-17;3!UBERON:0009856;1.29e-13;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3 | |||
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| ||
|short_description=p@chr19:3562547..3562565,+ | |short_description=p@chr19:3562547..3562565,+ | ||
}} | }} |
Latest revision as of 06:32, 26 July 2015
Short description: | p@chr19:3562547..3562565, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:3562547..3562565, + |
Coexpression cluster: | C170_epitheloid_cervical_Hep2_keratoacanthoma_adult_neuroblastoma_signet |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 9.18e-26 | 2 |
non-small cell lung carcinoma | 3.60e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 8.85e-07 | 9 |