FFCP PHASE1:Hg19::chr19:18896642..18896656,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18896642..18896656,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18896642..18896656,- | |description=CAGE_peak_at_chr19:18896642..18896656,- | ||
|id=chr19:18896642..18896656,- | |id=chr19:18896642..18896656,- | ||
|ontology_enrichment_celltype=CL:0000136!5.03e-24!15;CL:0002334!3.00e-23!12;CL:0002580!6.82e-19!3;CL:0002615!1.16e-18!3;CL:0000135!3.16e-18!3;CL:0000386!3.16e-18!3;CL:0000388!3.16e-18!3;CL:0002579!8.01e-18!3;CL:0000153!3.24e-16!9;CL:0000447!3.24e-16!9;CL:0002617!3.28e-13!2;CL:0000499!9.83e-13!27;CL:0000057!3.59e-12!75;CL:0000327!2.42e-10!14;CL:0000667!1.62e-09!6;CL:0000058!1.62e-09!6;CL:0000138!1.62e-09!6;CL:0000214!1.15e-08!3;CL:0000325!1.70e-08!39;CL:0000134!6.47e-08!358;CL:0002320!1.19e-07!365;CL:0000055!1.84e-07!180;CL:0002581!3.01e-07!1;CL:0002616!3.40e-07!1 | |ontology_enrichment_celltype=CL:0000136!5.03e-24!15;CL:0002334!3.00e-23!12;CL:0002580!6.82e-19!3;CL:0002615!1.16e-18!3;CL:0000135!3.16e-18!3;CL:0000386!3.16e-18!3;CL:0000388!3.16e-18!3;CL:0002579!8.01e-18!3;CL:0000153!3.24e-16!9;CL:0000447!3.24e-16!9;CL:0002617!3.28e-13!2;CL:0000499!9.83e-13!27;CL:0000057!3.59e-12!75;CL:0000327!2.42e-10!14;CL:0000667!1.62e-09!6;CL:0000058!1.62e-09!6;CL:0000138!1.62e-09!6;CL:0000214!1.15e-08!3;CL:0000325!1.70e-08!39;CL:0000134!6.47e-08!358;CL:0002320!1.19e-07!365;CL:0000055!1.84e-07!180;CL:0002581!3.01e-07!1;CL:0002616!3.40e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.17e-37;12!CL:0002580;1.11e-29;3!CL:0002615;2.18e-29;3!CL:0000135;8.36e-29;3!CL:0000388;8.36e-29;3!CL:0002579;4.40e-28;3!CL:0000136;3.63e-26;13!CL:0002617;1.77e-20;2!CL:0000153;3.08e-17;9!CL:0000447;3.08e-17;9!CL:0000499;6.53e-16;28!CL:0000138;6.72e-15;6!CL:0002581;9.97e-11;1!CL:0002616;9.97e-11;1!CL:0000327;1.97e-10;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.02e-37,12;CL:0002580,9.11e-30,3;CL:0002615,2.18e-29,3;CL:0000135,1.11e-28,3;CL:0000388,1.11e-28,3;CL:0002579,5.07e-28,3;CL:0000136,1.21e-22,15;CL:0002617,1.69e-20,2;CL:0000153,3.08e-17,9;CL:0000447,3.08e-17,9;CL:0000499,7.00e-16,28;CL:0000058,6.41e-15,6;CL:0000138,6.41e-15,6;CL:0000057,6.35e-11,76;CL:0002581,8.22e-11,1;CL:0002616,9.97e-11,1;CL:0000327,1.97e-10,15;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!1.11e-34!6;UBERON:0002358!1.11e-34!6;UBERON:0003684!1.11e-34!6;UBERON:0001178!1.11e-34!6;UBERON:0004457!5.89e-30!12;UBERON:0000042!5.89e-30!12;UBERON:0000043!3.16e-18!3;UBERON:0000310!4.64e-15!10;UBERON:0001443!1.14e-13!11;UBERON:0005406!9.00e-13!2;UBERON:0006915!1.15e-08!3;UBERON:0002018!1.15e-08!3;UBERON:0002217!1.15e-08!3;UBERON:0007616!1.15e-08!3;UBERON:0002384!2.72e-07!375;UBERON:0007029!5.78e-07!1;UBERON:0002135!7.73e-07!1;UBERON:0004923!9.33e-07!57;UBERON:0001013!9.71e-07!14;UBERON:0001301!9.73e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.22e-55;6!UBERON:0002358;1.22e-55;6!UBERON:0003684;1.22e-55;6!UBERON:0001178;1.22e-55;6!UBERON:0004457;2.24e-50;9!UBERON:0000042;2.24e-50;9!UBERON:0007846;8.36e-29;3!UBERON:0000043;8.36e-29;3!UBERON:0007845;8.36e-29;3!UBERON:0000310;3.48e-24;10!UBERON:0001443;5.52e-22;11!UBERON:0005406;1.06e-19;2!UBERON:0004458;7.63e-08;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.40e-55,6;UBERON:0002358,1.40e-55,6;UBERON:0003684,1.40e-55,6;UBERON:0001178,1.40e-55,6;UBERON:0004457,1.34e-37,12;UBERON:0000042,1.34e-37,12;UBERON:0007846,1.11e-28,3;UBERON:0000043,1.11e-28,3;UBERON:0007845,1.11e-28,3;UBERON:0000310,3.09e-24,10;UBERON:0001443,4.95e-22,11;UBERON:0005406,8.72e-20,2;UBERON:0004458,1.03e-08,49;UBERON:0009569,1.33e-08,112;UBERON:0002384,2.34e-08,371;UBERON:0002323,6.26e-07,46 | |||
|phase1_expression=4.90531624030503,8.56402095563933,2.96004248601539,14.0102617694383,3.5756887554183,2.61701557230111,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49024208778554,1.5905718941022,5.35298357332899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,13.6444502433591,0,0,0,0,0,0,0,0,0,0,0,0,3.72161711728165,5.52463103837025,8.98112302185835,1.02511319404561,1.02341449813341,1.12597744800525,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01104507065562,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23197010900051,3.69740502905135,2.59575937274273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=4.90531624030503,8.56402095563933,2.96004248601539,14.0102617694383,3.5756887554183,2.61701557230111,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49024208778554,1.5905718941022,5.35298357332899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,13.6444502433591,0,0,0,0,0,0,0,0,0,0,0,0,3.72161711728165,5.52463103837025,8.98112302185835,1.02511319404561,1.02341449813341,1.12597744800525,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01104507065562,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23197010900051,3.69740502905135,2.59575937274273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:18896642..18896656,- | |short_description=p@chr19:18896642..18896656,- | ||
}} | }} |
Latest revision as of 05:20, 26 July 2015
Short description: | p@chr19:18896642..18896656, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18896642..18896656, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.02e-37 | 12 |
preadipocyte of the breast | 9.11e-30 | 3 |
adipocyte of omentum tissue | 2.18e-29 | 3 |
fibrocyte | 1.11e-28 | 3 |
tendon cell | 1.11e-28 | 3 |
omentum preadipocyte | 5.07e-28 | 3 |
fat cell | 1.21e-22 | 15 |
adipocyte of breast | 1.69e-20 | 2 |
GAG secreting cell | 3.08e-17 | 9 |
carbohydrate secreting cell | 3.08e-17 | 9 |
stromal cell | 7.00e-16 | 28 |
chondroblast | 6.41e-15 | 6 |
chondrocyte | 6.41e-15 | 6 |
fibroblast | 6.35e-11 | 76 |
perirenal preadipocyte | 8.22e-11 | 1 |
perirenal adipocyte cell | 9.97e-11 | 1 |
extracellular matrix secreting cell | 1.97e-10 | 15 |
mesenchymal cell | 6.59e-09 | 354 |
connective tissue cell | 1.13e-08 | 361 |
motile cell | 7.44e-08 | 386 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.40e-55 | 6 |
peritoneum | 1.40e-55 | 6 |
abdominal cavity | 1.40e-55 | 6 |
visceral peritoneum | 1.40e-55 | 6 |
cavity lining | 1.34e-37 | 12 |
serous membrane | 1.34e-37 | 12 |
dense regular connective tissue | 1.11e-28 | 3 |
tendon | 1.11e-28 | 3 |
regular connective tissue | 1.11e-28 | 3 |
breast | 3.09e-24 | 10 |
chest | 4.95e-22 | 11 |
perirenal fat | 8.72e-20 | 2 |
body cavity or lining | 1.03e-08 | 49 |
subdivision of trunk | 1.33e-08 | 112 |
connective tissue | 2.34e-08 | 371 |
body cavity | 6.26e-07 | 46 |