FFCP PHASE1:Hg19::chr19:18709616..18709634,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18709616..18709634,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18709616..18709634,- | |description=CAGE_peak_at_chr19:18709616..18709634,- | ||
|id=chr19:18709616..18709634,- | |id=chr19:18709616..18709634,- | ||
|ontology_enrichment_celltype=CL:0002334!1.51e-11!12;CL:0000136!6.61e-10!15;CL:0000153!2.17e-09!9;CL:0000447!2.17e-09!9;CL:0000057!1.76e-08!75;CL:0000055!5.79e-08!180;CL:0000499!2.41e-07!27 | |ontology_enrichment_celltype=CL:0002334!1.51e-11!12;CL:0000136!6.61e-10!15;CL:0000153!2.17e-09!9;CL:0000447!2.17e-09!9;CL:0000057!1.76e-08!75;CL:0000055!5.79e-08!180;CL:0000499!2.41e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.43e-23;9!CL:0000447;1.43e-23;9!CL:0000136;1.81e-21;13!CL:0000138;3.10e-14;6!CL:0002334;7.74e-14;12!CL:0000327;1.40e-13;15!CL:0000499;6.48e-13;28!CL:0002615;4.13e-12;3!CL:0000135;1.07e-11;3!CL:0000388;1.07e-11;3!CL:0002580;1.39e-11;3!CL:0000214;2.75e-11;3!CL:0002579;3.44e-11;3!CL:0002521;3.62e-11;3!CL:0002617;1.37e-08;2!CL:0002195;2.21e-07;2!CL:0002571;2.21e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,4.94e-27,15;CL:0000153,1.18e-23,9;CL:0000447,1.18e-23,9;CL:0000058,2.85e-14,6;CL:0000138,2.85e-14,6;CL:0002334,7.60e-14,12;CL:0000327,1.25e-13,15;CL:0000499,6.02e-13,28;CL:0002615,4.13e-12,3;CL:0000135,1.09e-11,3;CL:0000388,1.09e-11,3;CL:0002580,1.34e-11,3;CL:0000214,2.44e-11,3;CL:0002579,3.44e-11,3;CL:0002521,4.09e-11,3;CL:0000048,1.10e-09,427;CL:0000723,2.15e-09,433;CL:0000134,2.43e-09,354;CL:0000034,5.13e-09,441;CL:0002320,5.81e-09,361;CL:0002617,1.38e-08,2;CL:0000219,1.24e-07,386;CL:0002195,1.94e-07,2;CL:0002571,1.94e-07,2;CL:0000057,9.02e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001013!5.12e-10!14;UBERON:0003688!6.19e-09!6;UBERON:0002358!6.19e-09!6;UBERON:0003684!6.19e-09!6;UBERON:0001178!6.19e-09!6;UBERON:0004457!1.25e-08!12;UBERON:0000042!1.25e-08!12 | |ontology_enrichment_uberon=UBERON:0001013!5.12e-10!14;UBERON:0003688!6.19e-09!6;UBERON:0002358!6.19e-09!6;UBERON:0003684!6.19e-09!6;UBERON:0001178!6.19e-09!6;UBERON:0004457!1.25e-08!12;UBERON:0000042!1.25e-08!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.17e-31;9!UBERON:0000042;4.17e-31;9!UBERON:0003688;1.50e-21;6!UBERON:0002358;1.50e-21;6!UBERON:0003684;1.50e-21;6!UBERON:0001178;1.50e-21;6!UBERON:0001013;4.76e-15;14!UBERON:0007846;1.07e-11;3!UBERON:0000043;1.07e-11;3!UBERON:0007845;1.07e-11;3!UBERON:0006915;2.75e-11;3!UBERON:0007616;2.75e-11;3!UBERON:0002217;2.75e-11;3!UBERON:0002018;2.75e-11;3!UBERON:0002190;3.62e-11;3!UBERON:0000310;4.97e-09;10!UBERON:0005406;1.23e-08;2!UBERON:0001443;3.59e-08;11!UBERON:0002072;7.49e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,6.52e-23,12;UBERON:0000042,6.52e-23,12;UBERON:0003688,1.50e-21,6;UBERON:0002358,1.50e-21,6;UBERON:0003684,1.50e-21,6;UBERON:0001178,1.50e-21,6;UBERON:0001013,5.45e-15,14;UBERON:0007846,1.09e-11,3;UBERON:0000043,1.09e-11,3;UBERON:0007845,1.09e-11,3;UBERON:0006915,2.44e-11,3;UBERON:0007616,2.44e-11,3;UBERON:0002217,2.44e-11,3;UBERON:0002018,2.44e-11,3;UBERON:0002190,4.09e-11,3;UBERON:0000310,4.89e-09,10;UBERON:0005406,1.23e-08,2;UBERON:0002384,1.90e-08,371;UBERON:0001443,3.54e-08,11;UBERON:0009569,1.40e-07,112;UBERON:0002417,6.70e-07,60;UBERON:0000916,6.70e-07,60;UBERON:0002072,8.04e-07,5 | |||
|phase1_expression=28.5235055454774,68.9403686928966,20.2974341898198,70.0513088471913,71.9607362027933,47.9786188255203,25.3299878168311,5.05375898741465,2.08948502559871,0.245733936501509,4.18680700783456,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,5.06014813338393,1.50401373190767,18.6852009459463,2.3858578411533,15.0856809793817,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0.132409180813219,3.72887606973458,2.4826786753885,0,1.06748995729705,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0.901428353439581,0,0,0,0,0.600182192168805,0.206105058476878,1.54584324027377,0.37223371266318,0,0.292311015483596,0,0.0920498986422993,0.484938170456436,1.42003837006646,0.806016785821122,0.169560592310488,0,0,0,0.243947412259191,0,0.232387885739037,0.310983165046111,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0.220587945464788,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,17.8828222925941,0,0,0,0,0,0,1.42977993658148,0,0,0,2.84313558994037,0,0,0,0,0,0,0,0,0,0,3.18518874668674,9.04095819221687,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,4.5481500811197,3.10419213877515,0,0,0.260650843404249,0,0,0,0,0,0,0,0,11.164851351845,5.21770709179412,58.9386198309454,19.6052898361222,4.09365799253363,3.21707842287215,59.3672265779964,0.154209693802656,0.355123450626254,0,0.519254429183621,0.464841513839837,0,0,0,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.275673144969061,0.107420244868274,0,0.0852266274161009,0.178064071293475,0,0,0,0.10115778085555,2.32422774648643,1.25924938732256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0,0,0,0,0,0,0,0.136499911407986,0.282810863907425,0,0.551365343546124,1.99031692572366,0,0,0,0,0,0,0,0,0,0,43.9103881419141,35.5638484396694,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,1.79323189425963,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0,0,1.09692698576986,0.32681539055697,0,0.0769502585037971,0,0,0.0897576444097721,0,1.5950057986596,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0.313932918407225,0,0,0,0,0,0,1.22308667769421,0.171986032471617,0,0,0,0.193978032976839,0,0,0,0,0.316553979779393,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,2.14613024068285,0,0.201550417460179,0,0,6.61778731380679,6.42843695373098,4.98786224520968,0,0,0,0.136203406111576,0.803765742325096,1.2378549293751,0.83088067605837,0,0,0,0,0,0,0,8.06793026997802,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.3755727921195,0,0.221858103073705,0.0620964029413835,0,0.499921631848426,0,0,0,0,0.434763085832475,0.895528817321244,0,0.554805861502613,0,0.50313580350515,0,0.457680136793847,0,1.86524640699337,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.800055529326307,3.09056134664514,3.03074539889327,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0,0,0.0788617450012534,0,1.41070377476274,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0.484426936895553,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0,0.0675375846183947,0.781078098613847,0.206686796501184,0,0,0,0,0,0,0,0,0.606965604236632,0,0.443511850813194,0,0.171488009437418,0,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,1.0243108625637,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,2.0391253762538,0,0,0,0,0,0,0,0,0,1.57771562193185,0.0679914901909147,0,0,14.5078057085033,41.5958065768276,17.7376890470754,0,0.109265571963696,0.253397002022874,0,0,0,0.250707539292375,0.227336094654718,0.267964130156178,0,0.310298987585686,0,0.952257725854961,0,0,0,0.700118741059814,0,0.653150243690884,0,0,0.0717222053926763,0.99798106963804,0,0,0,0,2.34640942403454,0,0,0,0,0 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| ||
|short_description=p@chr19:18709616..18709634,- | |short_description=p@chr19:18709616..18709634,- | ||
}} | }} |
Latest revision as of 05:16, 26 July 2015
Short description: | p@chr19:18709616..18709634, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18709616..18709634, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 4.94e-27 | 15 |
GAG secreting cell | 1.18e-23 | 9 |
carbohydrate secreting cell | 1.18e-23 | 9 |
chondroblast | 2.85e-14 | 6 |
chondrocyte | 2.85e-14 | 6 |
preadipocyte | 7.60e-14 | 12 |
extracellular matrix secreting cell | 1.25e-13 | 15 |
stromal cell | 6.02e-13 | 28 |
adipocyte of omentum tissue | 4.13e-12 | 3 |
fibrocyte | 1.09e-11 | 3 |
tendon cell | 1.09e-11 | 3 |
preadipocyte of the breast | 1.34e-11 | 3 |
synovial cell | 2.44e-11 | 3 |
omentum preadipocyte | 3.44e-11 | 3 |
subcutaneous fat cell | 4.09e-11 | 3 |
multi fate stem cell | 1.10e-09 | 427 |
somatic stem cell | 2.15e-09 | 433 |
mesenchymal cell | 2.43e-09 | 354 |
stem cell | 5.13e-09 | 441 |
connective tissue cell | 5.81e-09 | 361 |
adipocyte of breast | 1.38e-08 | 2 |
motile cell | 1.24e-07 | 386 |
hepatic stem cell | 1.94e-07 | 2 |
hepatic mesenchymal stem cell | 1.94e-07 | 2 |
fibroblast | 9.02e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 6.52e-23 | 12 |
serous membrane | 6.52e-23 | 12 |
omentum | 1.50e-21 | 6 |
peritoneum | 1.50e-21 | 6 |
abdominal cavity | 1.50e-21 | 6 |
visceral peritoneum | 1.50e-21 | 6 |
adipose tissue | 5.45e-15 | 14 |
dense regular connective tissue | 1.09e-11 | 3 |
tendon | 1.09e-11 | 3 |
regular connective tissue | 1.09e-11 | 3 |
stratified squamous epithelium | 2.44e-11 | 3 |
layer of synovial tissue | 2.44e-11 | 3 |
synovial joint | 2.44e-11 | 3 |
synovial membrane of synovial joint | 2.44e-11 | 3 |
subcutaneous adipose tissue | 4.09e-11 | 3 |
breast | 4.89e-09 | 10 |
perirenal fat | 1.23e-08 | 2 |
connective tissue | 1.90e-08 | 371 |
chest | 3.54e-08 | 11 |
subdivision of trunk | 1.40e-07 | 112 |
abdominal segment of trunk | 6.70e-07 | 60 |
abdomen | 6.70e-07 | 60 |
hypodermis | 8.04e-07 | 5 |