FFCP PHASE1:Hg19::chr18:59139413..59139422,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:59139413..59139422,+ | |||
|coexpression_cluster_id=C1801 | |||
|description=CAGE_peak_at_chr18:59139413..59139422,+ | |description=CAGE_peak_at_chr18:59139413..59139422,+ | ||
|id=chr18:59139413..59139422,+ | |id=chr18:59139413..59139422,+ | ||
|ontology_enrichment_celltype=CL:0000128!1.62e-17!7;CL:0000126!1.62e-17!7;CL:0000127!1.62e-17!7;CL:0002453!1.62e-17!7;CL:0002319!1.63e-16!25;CL:0002605!7.56e-16!3;CL:0000047!1.45e-15!8;CL:0000133!1.33e-12!59;CL:0000221!4.95e-10!71;CL:0000540!4.47e-08!6;CL:0000031!4.47e-08!6;CL:0000404!4.47e-08!6;CL:0002603!2.72e-07!3;CL:0000064!3.28e-07!3;CL:0005012!3.28e-07!3;CL:0000067!3.28e-07!3;CL:0002304!3.28e-07!3;CL:0000243!4.95e-07!15;CL:0000125!4.95e-07!15;CL:0000030!4.95e-07!15;CL:0000339!4.95e-07!15 | |ontology_enrichment_celltype=CL:0000128!1.62e-17!7;CL:0000126!1.62e-17!7;CL:0000127!1.62e-17!7;CL:0002453!1.62e-17!7;CL:0002319!1.63e-16!25;CL:0002605!7.56e-16!3;CL:0000047!1.45e-15!8;CL:0000133!1.33e-12!59;CL:0000221!4.95e-10!71;CL:0000540!4.47e-08!6;CL:0000031!4.47e-08!6;CL:0000404!4.47e-08!6;CL:0002603!2.72e-07!3;CL:0000064!3.28e-07!3;CL:0005012!3.28e-07!3;CL:0000067!3.28e-07!3;CL:0002304!3.28e-07!3;CL:0000243!4.95e-07!15;CL:0000125!4.95e-07!15;CL:0000030!4.95e-07!15;CL:0000339!4.95e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.72e-40;2!CL:0002605;1.06e-27;3!CL:0002319;2.27e-26;25!CL:0000540;3.59e-14;6!CL:0000404;3.59e-14;6!CL:0000128;1.78e-12;7!CL:0000126;1.78e-12;7!CL:0000127;1.78e-12;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,9.60e-40,8;CL:0002605,1.06e-27,3;CL:0002319,2.17e-26,25;CL:0000540,3.04e-14,6;CL:0000031,3.04e-14,6;CL:0000404,3.04e-14,6;CL:0000128,1.78e-12,7;CL:0000126,1.78e-12,7;CL:0000127,1.78e-12,7;CL:0002453,1.78e-12,7;CL:0000133,1.11e-11,59;CL:0000221,1.30e-09,72 | |||
|ontology_enrichment_development_v019=CL:0000031;3.59e-14;6!CL:0000133;6.95e-09;59!UBERON:0006241;7.26e-08;3!UBERON:0003057;7.26e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.31e-30!86;UBERON:0000073!3.28e-27!94;UBERON:0001016!3.28e-27!94;UBERON:0001017!4.62e-27!82;UBERON:0003075!8.99e-26!86;UBERON:0007284!8.99e-26!86;UBERON:0002346!2.15e-24!90;UBERON:0001049!3.79e-22!57;UBERON:0005068!3.79e-22!57;UBERON:0006241!3.79e-22!57;UBERON:0007135!3.79e-22!57;UBERON:0003056!1.14e-20!61;UBERON:0002616!1.01e-18!59;UBERON:0004121!2.76e-18!169;UBERON:0000033!9.58e-18!123;UBERON:0000924!1.02e-17!173;UBERON:0006601!1.02e-17!173;UBERON:0000955!3.36e-17!69;UBERON:0006238!3.36e-17!69;UBERON:0000153!1.14e-16!129;UBERON:0007811!1.14e-16!129;UBERON:0002791!1.30e-14!33;UBERON:0001893!3.91e-14!34;UBERON:0002780!9.52e-14!41;UBERON:0001890!9.52e-14!41;UBERON:0006240!9.52e-14!41;UBERON:0000956!2.02e-13!25;UBERON:0000203!2.02e-13!25;UBERON:0003080!2.27e-13!42;UBERON:0001869!1.53e-12!32;UBERON:0002020!1.02e-11!34;UBERON:0003528!1.02e-11!34;UBERON:0000488!3.05e-11!4;UBERON:0000970!5.71e-11!20;UBERON:0007625!9.01e-11!11;UBERON:0003076!1.02e-10!15;UBERON:0003057!1.02e-10!15;UBERON:0002104!2.11e-10!21;UBERON:0004733!1.78e-09!12;UBERON:0002028!1.78e-09!12;UBERON:0007277!1.78e-09!12;UBERON:0000020!2.06e-09!23;UBERON:0001032!5.58e-09!24;UBERON:0004456!5.58e-09!24;UBERON:0000349!8.50e-09!5;UBERON:0004732!9.98e-09!13;UBERON:0000019!1.44e-08!19;UBERON:0000047!1.44e-08!19;UBERON:0004088!1.44e-08!19;UBERON:0003072!1.44e-08!19;UBERON:0003071!1.44e-08!19;UBERON:0004128!1.44e-08!19;UBERON:0001456!1.08e-07!21;UBERON:0002203!1.22e-07!6;UBERON:0001768!1.22e-07!6;UBERON:0002037!1.28e-07!6;UBERON:0006215!1.28e-07!6;UBERON:0001778!3.28e-07!3;UBERON:0001775!3.28e-07!3;UBERON:0001896!5.90e-07!3;UBERON:0005290!5.90e-07!3;UBERON:0010096!5.90e-07!3;UBERON:0002619!8.55e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;7.26e-08;3!UBERON:0005174;7.26e-08;3!UBERON:0001137;7.26e-08;3!UBERON:0000956;1.53e-07;25!UBERON:0000203;1.53e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.12e-15,81;UBERON:0001016,1.91e-13,89;UBERON:0004121,8.24e-09,171;UBERON:0000924,8.24e-09,171;UBERON:0006601,8.24e-09,171;UBERON:0002240,8.29e-08,3;UBERON:0005174,8.29e-08,3;UBERON:0001137,8.29e-08,3;UBERON:0000956,1.49e-07,25;UBERON:0000203,1.49e-07,25 | |||
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|short_description=p@chr18:59139413..59139422,+ | |short_description=p@chr18:59139413..59139422,+ | ||
}} | }} |
Latest revision as of 01:43, 26 July 2015
Short description: | p@chr18:59139413..59139422, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:59139413..59139422, + |
Coexpression cluster: | C1801_Lens_Astrocyte_Neural_Neurons_H9_eye_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 9.60e-40 | 8 |
astrocyte of the cerebral cortex | 1.06e-27 | 3 |
neural cell | 2.17e-26 | 25 |
neuron | 3.04e-14 | 6 |
neuroblast | 3.04e-14 | 6 |
electrically signaling cell | 3.04e-14 | 6 |
oligodendrocyte | 1.78e-12 | 7 |
macroglial cell | 1.78e-12 | 7 |
astrocyte | 1.78e-12 | 7 |
oligodendrocyte precursor cell | 1.78e-12 | 7 |
neurectodermal cell | 1.11e-11 | 59 |
ectodermal cell | 1.30e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.12e-15 | 81 |
nervous system | 1.91e-13 | 89 |
ectoderm-derived structure | 8.24e-09 | 171 |
ectoderm | 8.24e-09 | 171 |
presumptive ectoderm | 8.24e-09 | 171 |
spinal cord | 8.29e-08 | 3 |
dorsal region element | 8.29e-08 | 3 |
dorsum | 8.29e-08 | 3 |
cerebral cortex | 1.49e-07 | 25 |
pallium | 1.49e-07 | 25 |