FFCP PHASE1:Hg19::chr17:78070711..78070726,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:78070711..78070726,+ | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_at_chr17:78070711..78070726,+ | |||
|id=chr17:78070711..78070726,+ | |||
|ontology_enrichment_celltype=CL:0000188!4.30e-10!9;CL:0000242!3.37e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.46e-50;2!CL:0000242;1.46e-50;2!CL:0000333;5.44e-45;5!CL:0000312;6.01e-21;5!CL:0000240;1.22e-17;6!CL:0000311;1.22e-17;6!CL:0000079;1.22e-17;6!CL:0000237;1.22e-17;6!CL:0002321;1.44e-15;15!CL:0000362;4.18e-12;9!CL:0002159;4.04e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.14e-50,2;CL:0000312,5.44e-21,5;CL:0000240,1.12e-17,6;CL:0000311,1.12e-17,6;CL:0000079,1.12e-17,6;CL:0000237,1.12e-17,6;CL:0000036,1.12e-17,6;CL:0000357,1.12e-17,6;CL:0000114,1.12e-17,6;CL:0000333,1.06e-14,41;CL:0000362,3.95e-12,9;CL:0000133,1.94e-10,59;CL:0000221,1.22e-08,72;CL:0002159,3.90e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000357;1.22e-17;6!CL:0000114;1.22e-17;6!CL:0000221;8.79e-08;72 | |||
|ontology_enrichment_disease=DOID:171!1.12e-13!10;DOID:3095!4.27e-10!22;DOID:2994!4.27e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:171;1.54e-61;10!DOID:169;1.18e-37;6!DOID:3095;2.93e-28;22!DOID:2994;2.93e-28;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.98e-61,10;DOID:169,1.52e-37,6;DOID:3095,3.28e-28,22;DOID:2994,3.28e-28,22;DOID:0050687,1.68e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.13e-22!57;UBERON:0005068!4.13e-22!57;UBERON:0006241!4.13e-22!57;UBERON:0007135!4.13e-22!57;UBERON:0002616!5.67e-19!59;UBERON:0000073!9.57e-19!94;UBERON:0001016!9.57e-19!94;UBERON:0002346!1.61e-18!90;UBERON:0000955!4.79e-17!69;UBERON:0006238!4.79e-17!69;UBERON:0005743!9.24e-16!86;UBERON:0001017!3.29e-15!82;UBERON:0003075!1.93e-14!86;UBERON:0007284!1.93e-14!86;UBERON:0001893!2.40e-14!34;UBERON:0002780!2.26e-13!41;UBERON:0001890!2.26e-13!41;UBERON:0006240!2.26e-13!41;UBERON:0003080!5.47e-13!42;UBERON:0001869!6.86e-13!32;UBERON:0002791!1.18e-12!33;UBERON:0000924!2.05e-12!173;UBERON:0006601!2.05e-12!173;UBERON:0001950!2.18e-12!20;UBERON:0002020!3.79e-12!34;UBERON:0003528!3.79e-12!34;UBERON:0003076!3.03e-11!15;UBERON:0003057!3.03e-11!15;UBERON:0002619!3.63e-11!22;UBERON:0004733!1.32e-10!12;UBERON:0002028!1.32e-10!12;UBERON:0007277!1.32e-10!12;UBERON:0004121!9.48e-10!169;UBERON:0004732!9.79e-10!13;UBERON:0000956!1.09e-09!25;UBERON:0000203!1.09e-09!25;UBERON:0000033!1.73e-09!123;UBERON:0003056!2.34e-09!61;UBERON:0000153!8.15e-09!129;UBERON:0007811!8.15e-09!129;UBERON:0007023!1.78e-08!115;UBERON:0000013!8.00e-08!5;UBERON:0002410!8.00e-08!5;UBERON:0002298!1.89e-07!8;UBERON:0001872!5.78e-07!5;UBERON:0002680!5.96e-07!9;UBERON:0001895!5.96e-07!9;UBERON:0010092!5.96e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;5.44e-45;5!UBERON:0002410;5.44e-45;5!UBERON:0002346;1.43e-25;4!UBERON:0000923;1.43e-25;4!UBERON:0010316;1.43e-25;4!UBERON:0005291;1.43e-25;4!UBERON:0000010;2.09e-25;8!UBERON:0002050;1.10e-20;5!UBERON:0005423;1.10e-20;5!UBERON:0001003;1.22e-07;15!UBERON:0007376;1.22e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,7.36e-45,5;UBERON:0002410,7.36e-45,5;UBERON:0000010,2.47e-25,8;UBERON:0001003,1.18e-07,15;UBERON:0007376,1.18e-07,15;UBERON:0007383,1.18e-07,15;UBERON:0004121,5.76e-07,171;UBERON:0000924,5.76e-07,171;UBERON:0006601,5.76e-07,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580024309752732,0,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0.979352392114111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0.344743373241465,1.74962768029953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741412462787447,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.248385611765534,0,0,0,0,0,2.81000943484129,15.6514710899691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9647255104132,2.58779547352036,0,1.41972529649618,1.69732529954025,2.76347396132188,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0.252071696221718,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.40781839786099,0.263091094251396,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0,0.109940516745429,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0.378499274505237,0,0,0,0.534434810531121,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:78070711..78070726,+ | |||
}} |
Latest revision as of 22:27, 25 July 2015
Short description: | p@chr17:78070711..78070726, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:78070711..78070726, + |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.14e-50 | 2 |
keratinocyte | 5.44e-21 | 5 |
stratified squamous epithelial cell | 1.12e-17 | 6 |
keratin accumulating cell | 1.12e-17 | 6 |
stratified epithelial cell | 1.12e-17 | 6 |
keratinizing barrier epithelial cell | 1.12e-17 | 6 |
epithelial fate stem cell | 1.12e-17 | 6 |
stratified epithelial stem cell | 1.12e-17 | 6 |
surface ectodermal cell | 1.12e-17 | 6 |
migratory neural crest cell | 1.06e-14 | 41 |
epidermal cell | 3.95e-12 | 9 |
neurectodermal cell | 1.94e-10 | 59 |
ectodermal cell | 1.22e-08 | 72 |
general ecto-epithelial cell | 3.90e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 7.36e-45 | 5 |
autonomic nervous system | 7.36e-45 | 5 |
peripheral nervous system | 2.47e-25 | 8 |
skin epidermis | 1.18e-07 | 15 |
outer epithelium | 1.18e-07 | 15 |
enveloping layer of ectoderm | 1.18e-07 | 15 |
ectoderm-derived structure | 5.76e-07 | 171 |
ectoderm | 5.76e-07 | 171 |
presumptive ectoderm | 5.76e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.98e-61 | 10 |
neuroendocrine tumor | 1.52e-37 | 6 |
germ cell and embryonal cancer | 3.28e-28 | 22 |
germ cell cancer | 3.28e-28 | 22 |
cell type cancer | 1.68e-08 | 143 |