FFCP PHASE1:Hg19::chr17:76628163..76628174,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:76628163..76628174,- | |||
|description=CAGE_peak_at_chr17:76628163..76628174,- | |description=CAGE_peak_at_chr17:76628163..76628174,- | ||
|id=chr17:76628163..76628174,- | |id=chr17:76628163..76628174,- | ||
|ontology_enrichment_celltype=CL:0000860!1.83e-24!45;CL:0002194!2.82e-20!63;CL:0000576!2.82e-20!63;CL:0000040!2.82e-20!63;CL:0000559!2.82e-20!63;CL:0002009!1.95e-19!65;CL:0002057!2.91e-19!42;CL:0000839!1.51e-17!70;CL:0000557!3.34e-17!71;CL:0000766!4.22e-17!76;CL:0000763!1.11e-16!112;CL:0000049!1.11e-16!112;CL:0002032!2.87e-16!165;CL:0000837!2.87e-16!165;CL:0002087!3.96e-16!119;CL:0000037!3.72e-15!172;CL:0000566!3.72e-15!172;CL:0002031!4.15e-15!124;CL:0000988!1.05e-14!182;CL:0000738!2.39e-14!140;CL:0002150!3.62e-09!3;CL:0000861!3.62e-09!3 | |ontology_enrichment_celltype=CL:0000860!1.83e-24!45;CL:0002194!2.82e-20!63;CL:0000576!2.82e-20!63;CL:0000040!2.82e-20!63;CL:0000559!2.82e-20!63;CL:0002009!1.95e-19!65;CL:0002057!2.91e-19!42;CL:0000839!1.51e-17!70;CL:0000557!3.34e-17!71;CL:0000766!4.22e-17!76;CL:0000763!1.11e-16!112;CL:0000049!1.11e-16!112;CL:0002032!2.87e-16!165;CL:0000837!2.87e-16!165;CL:0002087!3.96e-16!119;CL:0000037!3.72e-15!172;CL:0000566!3.72e-15!172;CL:0002031!4.15e-15!124;CL:0000988!1.05e-14!182;CL:0000738!2.39e-14!140;CL:0002150!3.62e-09!3;CL:0000861!3.62e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;9.45e-18;3!CL:0000082;1.81e-11;19!CL:0002202;8.37e-07;9!CL:0002632;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0000082,1.91e-11,19;CL:0000076,5.58e-08,63;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.15e-08;29!UBERON:0001041;1.21e-07;30 | |||
|ontology_enrichment_disease=DOID:162!3.21e-12!235;DOID:14566!1.02e-11!239;DOID:1749!1.63e-10!14;DOID:305!7.99e-10!106;DOID:0050687!2.10e-08!143;DOID:2531!3.85e-08!51;DOID:0060083!3.85e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:3908;3.31e-40;5!DOID:1749;1.63e-32;14!DOID:3910;7.14e-26;2!DOID:3905;6.41e-23;9!DOID:4556;9.45e-18;3!DOID:1324;3.15e-14;15!DOID:0050615;2.07e-13;16!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,4.05e-40,5;DOID:1749,1.46e-32,14;DOID:3910,9.18e-26,2;DOID:3905,7.17e-23,9;DOID:4556,9.46e-18,3;DOID:1324,3.36e-14,15;DOID:0050615,2.21e-13,16;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:305,2.62e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0002405!1.68e-14!115;UBERON:0002371!1.72e-14!80;UBERON:0001474!3.04e-14!86;UBERON:0002390!4.35e-13!102;UBERON:0003061!4.35e-13!102;UBERON:0002193!3.52e-12!112;UBERON:0004765!4.31e-11!101;UBERON:0001434!4.31e-11!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.14e-26;2!UBERON:0002173;7.14e-26;2!UBERON:0002186;7.14e-26;2!UBERON:0004821;9.45e-18;3!UBERON:0007499;9.45e-18;3!UBERON:0003215;9.45e-18;3!UBERON:0010368;9.45e-18;3!UBERON:0009911;9.45e-18;3!UBERON:0002299;9.45e-18;3!UBERON:0006524;9.45e-18;3!UBERON:0008874;9.45e-18;3!UBERON:0002169;9.45e-18;3!UBERON:0004894;9.45e-18;3!UBERON:0003343;8.81e-14;4!UBERON:0004785;8.81e-14;4!UBERON:0009856;1.13e-13;4!UBERON:0004802;1.81e-11;19!UBERON:0000115;1.81e-11;19!UBERON:0002048;4.74e-10;22!UBERON:0004807;4.74e-10;22!UBERON:0000117;4.74e-10;22!UBERON:0000171;4.74e-10;22!UBERON:0000170;4.74e-10;22!UBERON:0000974;1.22e-09;6!UBERON:0001004;7.40e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3;UBERON:0003343,8.82e-14,4;UBERON:0004785,8.82e-14,4;UBERON:0004802,1.91e-11,19;UBERON:0000115,1.91e-11,19;UBERON:0002048,4.96e-10,22;UBERON:0000117,4.96e-10,22;UBERON:0000171,4.96e-10,22;UBERON:0000170,4.96e-10,22;UBERON:0005597,4.96e-10,22;UBERON:0000118,4.96e-10,22;UBERON:0004807,4.21e-08,28;UBERON:0001004,6.78e-07,74;UBERON:0005178,7.59e-07,34;UBERON:0002224,7.59e-07,34 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0.822335776043652,0,0.28769239232215,0.256160706529101,0.47296445977717,0.689491361473237,0,0,0.188242339542605,0.272906150057846,0.224723484445085,0.306083892370903,0.641858054152187,0,0,0,0.852449501065388,0.290209238628584,0,0.622822248995575,0.251248665256743,0.521482918420201,0.217188844705117,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0.0711418433484141,0.318852545457645,0,0.191505370132367,0,0,0,0.228234679033192,0.156679895773023,0,0,0,0,0,0.343505344755765,0.307240764308458,0.223676107892416,0,0.19538809540204,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539210106883961,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0.113942055847001,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0.782658475728359,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.435296032902013,0,0,0.774050650312681,0.803982487948041,0.574808199372465,0,0,0,0.548167698587004,0.397429223405979,0,0,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,1.72723677587501,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84628383652974,0,0.183428598521679,0,0,0,0,0,0.40341013740704,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399764623699716,1.96409332466223,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr17:76628163..76628174,- | |short_description=p@chr17:76628163..76628174,- | ||
}} | }} |
Latest revision as of 22:04, 25 July 2015
Short description: | p@chr17:76628163..76628174, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:76628163..76628174, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of lung | 1.91e-11 | 19 |
squamous epithelial cell | 5.58e-08 | 63 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
mucosa of oral region | 8.82e-14 | 4 |
respiratory system mucosa | 8.82e-14 | 4 |
respiratory tract epithelium | 1.91e-11 | 19 |
lung epithelium | 1.91e-11 | 19 |
lung | 4.96e-10 | 22 |
respiratory tube | 4.96e-10 | 22 |
respiration organ | 4.96e-10 | 22 |
pair of lungs | 4.96e-10 | 22 |
lung primordium | 4.96e-10 | 22 |
lung bud | 4.96e-10 | 22 |
respiratory system epithelium | 4.21e-08 | 28 |
respiratory system | 6.78e-07 | 74 |
thoracic cavity element | 7.59e-07 | 34 |
thoracic cavity | 7.59e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 4.05e-40 | 5 |
squamous cell carcinoma | 1.46e-32 | 14 |
lung adenocarcinoma | 9.18e-26 | 2 |
lung carcinoma | 7.17e-23 | 9 |
lung large cell carcinoma | 9.46e-18 | 3 |
lung cancer | 3.36e-14 | 15 |
respiratory system cancer | 2.21e-13 | 16 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
carcinoma | 2.62e-08 | 106 |