FFCP PHASE1:Hg19::chr17:39680005..39680049,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39680005..39680049,- | |||
|coexpression_cluster_id=C2407 | |coexpression_cluster_id=C2407 | ||
|description=CAGE_peak_at_chr17:39680005..39680049,- | |description=CAGE_peak_at_chr17:39680005..39680049,- | ||
|id=chr17:39680005..39680049,- | |id=chr17:39680005..39680049,- | ||
|ontology_enrichment_celltype=CL:0000066!8.29e-31!254;CL:0002076!6.56e-18!43;CL:0000223!2.18e-16!59;CL:0002368!1.44e-09!13;CL:0002251!7.00e-09!21;CL:0000077!1.32e-07!19;CL:0000076!2.22e-07!62;CL:0000082!5.74e-07!19 | |ontology_enrichment_celltype=CL:0000066!8.29e-31!254;CL:0002076!6.56e-18!43;CL:0000223!2.18e-16!59;CL:0002368!1.44e-09!13;CL:0002251!7.00e-09!21;CL:0000077!1.32e-07!19;CL:0000076!2.22e-07!62;CL:0000082!5.74e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.34e-18;13!CL:0002328;8.88e-16;3!CL:0002202;1.15e-13;9!CL:0002632;1.15e-13;9!CL:0000650;2.59e-10;2!CL:1000500;2.59e-10;2!CL:1000618;2.59e-10;2!CL:1001318;2.59e-10;2!CL:0000575;2.59e-10;2!CL:0002173;2.59e-10;2!CL:0000077;1.63e-08;19!CL:0002076;3.13e-08;42!CL:0002577;1.89e-07;3!CL:1000746;9.12e-07;7!CL:1000612;9.12e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-19,253;CL:0002368,7.77e-18,13;CL:0002328,9.85e-16,3;CL:0002202,1.17e-13,9;CL:0002632,1.17e-13,9;CL:0002076,9.00e-12,42;CL:0000575,2.25e-10,2;CL:0000650,6.08e-10,2;CL:1000500,6.08e-10,2;CL:1000618,6.08e-10,2;CL:1001318,6.08e-10,2;CL:0002173,6.08e-10,2;CL:0000223,1.61e-09,58;CL:0000077,1.54e-08,19;CL:0000076,1.86e-08,63;CL:0002577,1.75e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.16e-16!106;DOID:0050687!4.21e-13!143;DOID:299!2.77e-11!25;DOID:162!1.33e-07!235;DOID:1749!2.94e-07!14;DOID:14566!4.26e-07!239 | |ontology_enrichment_disease=DOID:305!1.16e-16!106;DOID:0050687!4.21e-13!143;DOID:299!2.77e-11!25;DOID:162!1.33e-07!235;DOID:1749!2.94e-07!14;DOID:14566!4.26e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:5093;3.33e-12;4!DOID:1612;3.33e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.16e-12,4;DOID:1612,3.16e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.00e-20!169;UBERON:0000925!8.00e-20!169;UBERON:0006595!8.00e-20!169;UBERON:0001007!2.23e-14!155;UBERON:0001555!2.23e-14!155;UBERON:0007026!2.23e-14!155;UBERON:0000077!3.91e-12!130;UBERON:0004921!4.07e-12!129;UBERON:0004185!4.07e-12!129;UBERON:0005911!3.99e-11!82;UBERON:0001004!3.40e-10!72;UBERON:0005631!2.28e-09!14;UBERON:0000158!2.28e-09!14;UBERON:0000065!7.69e-09!53;UBERON:0000466!2.12e-08!126;UBERON:0004807!2.87e-08!28;UBERON:0000464!5.49e-08!104;UBERON:0000161!1.96e-07!35;UBERON:0005153!2.87e-07!37;UBERON:0000064!3.63e-07!219;UBERON:0009569!4.07e-07!113;UBERON:0005177!4.37e-07!107;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0004802!5.74e-07!19;UBERON:0000115!5.74e-07!19;UBERON:0001041!7.16e-07!98;UBERON:0005157!9.63e-07!51 | |ontology_enrichment_uberon=UBERON:0004119!8.00e-20!169;UBERON:0000925!8.00e-20!169;UBERON:0006595!8.00e-20!169;UBERON:0001007!2.23e-14!155;UBERON:0001555!2.23e-14!155;UBERON:0007026!2.23e-14!155;UBERON:0000077!3.91e-12!130;UBERON:0004921!4.07e-12!129;UBERON:0004185!4.07e-12!129;UBERON:0005911!3.99e-11!82;UBERON:0001004!3.40e-10!72;UBERON:0005631!2.28e-09!14;UBERON:0000158!2.28e-09!14;UBERON:0000065!7.69e-09!53;UBERON:0000466!2.12e-08!126;UBERON:0004807!2.87e-08!28;UBERON:0000464!5.49e-08!104;UBERON:0000161!1.96e-07!35;UBERON:0005153!2.87e-07!37;UBERON:0000064!3.63e-07!219;UBERON:0009569!4.07e-07!113;UBERON:0005177!4.37e-07!107;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0004802!5.74e-07!19;UBERON:0000115!5.74e-07!19;UBERON:0001041!7.16e-07!98;UBERON:0005157!9.63e-07!51 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;8.88e-16;3!UBERON:0002031;8.88e-16;3!UBERON:0003567;2.59e-10;2!UBERON:0003838;2.59e-10;2!UBERON:0003586;2.59e-10;2!UBERON:0005169;2.59e-10;2!UBERON:0002321;2.59e-10;2!UBERON:0005215;2.59e-10;2!UBERON:0002303;2.59e-10;2!UBERON:0002319;2.59e-10;2!UBERON:0002185;1.19e-09;5!UBERON:0007196;4.41e-08;15!UBERON:0001558;4.41e-08;15!UBERON:0000485;5.24e-07;7!UBERON:0000074;9.12e-07;7!UBERON:0001229;9.12e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,9.85e-16,3;UBERON:0002031,9.85e-16,3;UBERON:0003567,6.08e-10,2;UBERON:0003838,6.08e-10,2;UBERON:0003586,6.08e-10,2;UBERON:0005169,6.08e-10,2;UBERON:0002321,6.08e-10,2;UBERON:0005215,6.08e-10,2;UBERON:0002303,6.08e-10,2;UBERON:0002319,6.08e-10,2;UBERON:0002185,1.26e-09,5;UBERON:0005631,1.51e-08,14;UBERON:0000158,1.51e-08,14;UBERON:0007196,4.45e-08,15;UBERON:0001558,4.45e-08,15;UBERON:0003124,6.43e-07,7;UBERON:0006554,8.49e-07,47 | |||
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| ||
|short_description=p@chr17:39680005..39680049,- | |short_description=p@chr17:39680005..39680049,- | ||
}} | }} |
Latest revision as of 16:42, 25 July 2015
Short description: | p@chr17:39680005..39680049, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39680005..39680049, - |
Coexpression cluster: | C2407_Alveolar_Tracheal_Small_Bronchial_MCF7_Amniotic_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.16e-19 | 253 |
respiratory epithelial cell | 7.77e-18 | 13 |
bronchial epithelial cell | 9.85e-16 | 3 |
epithelial cell of tracheobronchial tree | 1.17e-13 | 9 |
epithelial cell of lower respiratory tract | 1.17e-13 | 9 |
endo-epithelial cell | 9.00e-12 | 42 |
corneal epithelial cell | 2.25e-10 | 2 |
mesangial cell | 6.08e-10 | 2 |
kidney interstitial cell | 6.08e-10 | 2 |
juxtaglomerular complex cell | 6.08e-10 | 2 |
renal interstitial pericyte | 6.08e-10 | 2 |
extraglomerular mesangial cell | 6.08e-10 | 2 |
endodermal cell | 1.61e-09 | 58 |
mesothelial cell | 1.54e-08 | 19 |
squamous epithelial cell | 1.86e-08 | 63 |
placental epithelial cell | 1.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 9.85e-16 | 3 |
epithelium of bronchus | 9.85e-16 | 3 |
abdomen connective tissue | 6.08e-10 | 2 |
abdominal segment connective tissue | 6.08e-10 | 2 |
trunk connective tissue | 6.08e-10 | 2 |
interstitial tissue | 6.08e-10 | 2 |
extraglomerular mesangium | 6.08e-10 | 2 |
kidney interstitium | 6.08e-10 | 2 |
juxtaglomerular apparatus | 6.08e-10 | 2 |
mesangium | 6.08e-10 | 2 |
bronchus | 1.26e-09 | 5 |
extraembryonic membrane | 1.51e-08 | 14 |
membranous layer | 1.51e-08 | 14 |
tracheobronchial tree | 4.45e-08 | 15 |
lower respiratory tract | 4.45e-08 | 15 |
chorion | 6.43e-07 | 7 |
urinary system structure | 8.49e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.16e-12 | 4 |
breast cancer | 3.16e-12 | 4 |