FFCP PHASE1:Hg19::chr16:77246337..77246389,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:77246337..77246389,+ | |||
|description=CAGE_peak_at_chr16:77246337..77246389,+ | |description=CAGE_peak_at_chr16:77246337..77246389,+ | ||
|id=chr16:77246337..77246389,+ | |id=chr16:77246337..77246389,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.85e-07!254 | |ontology_enrichment_celltype=CL:0000066!2.85e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:1000497;8.75e-12;17!CL:0002518;8.75e-12;17!CL:1000449;2.89e-11;15!CL:1000507;2.39e-09;10!CL:1000494;2.39e-09;10!CL:0002322;3.99e-09;5!CL:0002681;3.04e-07;12!CL:0002584;3.04e-07;12 | |ontology_enrichment_celltype_v019=CL:1000497;8.75e-12;17!CL:0002518;8.75e-12;17!CL:1000449;2.89e-11;15!CL:1000507;2.39e-09;10!CL:1000494;2.39e-09;10!CL:0002322;3.99e-09;5!CL:0002681;3.04e-07;12!CL:0002584;3.04e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.32e-11,17;CL:0002518,1.32e-11,17;CL:1000449,4.38e-11,15;CL:0000213,7.17e-10,58;CL:0000215,7.17e-10,58;CL:1000507,2.34e-09,10;CL:1000494,2.34e-09,10;CL:0002322,5.58e-09,5;CL:0002078,1.61e-07,45;CL:0002681,4.13e-07,12;CL:0002584,4.13e-07,12;CL:0000115,4.85e-07,36 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.89e-11;15!UBERON:0004819;2.89e-11;15!UBERON:0001285;2.89e-11;15!UBERON:0007684;2.89e-11;15!UBERON:0004211;2.39e-09;10!UBERON:0009773;2.39e-09;10!UBERON:0001231;2.39e-09;10!UBERON:0004810;2.39e-09;10!UBERON:0002113;1.02e-08;24!UBERON:0011143;1.02e-08;24!UBERON:0006554;2.25e-07;30!UBERON:0001008;2.25e-07;30!UBERON:0001225;3.04e-07;12!UBERON:0008987;3.04e-07;12!UBERON:0001851;3.75e-07;15!UBERON:0000353;4.50e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006555;2.89e-11;15!UBERON:0004819;2.89e-11;15!UBERON:0001285;2.89e-11;15!UBERON:0007684;2.89e-11;15!UBERON:0004211;2.39e-09;10!UBERON:0009773;2.39e-09;10!UBERON:0001231;2.39e-09;10!UBERON:0004810;2.39e-09;10!UBERON:0002113;1.02e-08;24!UBERON:0011143;1.02e-08;24!UBERON:0006554;2.25e-07;30!UBERON:0001008;2.25e-07;30!UBERON:0001225;3.04e-07;12!UBERON:0008987;3.04e-07;12!UBERON:0001851;3.75e-07;15!UBERON:0000353;4.50e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,4.38e-11,15;UBERON:0009773,4.38e-11,15;UBERON:0001231,4.38e-11,15;UBERON:0001285,4.38e-11,15;UBERON:0007684,4.38e-11,15;UBERON:0004208,4.38e-11,15;UBERON:0006555,3.25e-10,16;UBERON:0004819,3.25e-10,16;UBERON:0004810,2.34e-09,10;UBERON:0002113,1.37e-07,26;UBERON:0003918,1.37e-07,26;UBERON:0011143,1.37e-07,26;UBERON:0005095,1.37e-07,26;UBERON:0007687,1.37e-07,26;UBERON:0001225,4.13e-07,12;UBERON:0008987,4.13e-07,12;UBERON:0001851,4.91e-07,15;UBERON:0000353,6.12e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,3.48900583986214,0.655324116390517,0.527533956456907,0.123766352960047,0.331397375727916,0.672325146451775,0,0.730310090387373,0,2.09305798730539,1.42800483870977,1.88072832886853,0.286235987131057,0.547497700291537,1.25542639594803,0,0.0821005894499457,0.0787107813136792,0,0.767658796194425,0.154816123316076,0,0,0.739508020333575,0,0,0.880801318004542,0.553995408531877,0.200544447470142,1.30206522429511,0,0,0,0.290796477559129,0.755751887377619,0,0.232429036905685,0.411167888021826,1.23882548358041,0,0.256160706529101,0.236482229888585,0,0,0,0.376484679085209,0.272906150057846,0.449446968890169,0.306083892370903,0,0,0,0.797854630486527,0,0,1.13477044938228,1.24564449799115,0.75374599577023,1.0429658368404,0,0,0.368277635987565,0.316462387440884,0.211255286311942,0.637812899895131,0.419317291016752,0.22465726229299,0.300353785683013,0.32145117339416,0.855038231223746,0.39783335439818,0.365328307529268,0,0.546138611262131,1.77901850772711,0.853460445133014,0.400395987036012,0,0.661044872784862,0,0,0,1.91136614062614,2.64342657158052,2.24203425192614,1.31692042387539,0.590129310341499,2.35806457649499,1.02800749499755,0.334372990781356,3.91106719960308,0.473447805734733,5.84480185223734,0.334231370655521,1.47302953737419,1.32920336750173,0.812411591295047,0.512365278902701,0.390178042679635,0.328875809207352,0.829050053357545,0.579606171470105,1.77943875794473,2.40786745280742,0,1.0197840842781,1.14966148080576,1.03088233644789,0.506039384039006,0,0.651083453856419,0,1.20460095262218,0.511946444617674,0,0.473554504088034,0.821127996921047,0.604820229674197,1.06976078313403,1.01377082717959,2.43806866313962,1.34140171940727,0,0.361439152384566,0,0.289693037921647,0,0,0.945348171640679,1.55210578223795,0.263504357079378,0.0654895377488563,0.728590576585084,0.741568885568859,0,0,0,1.90792499444274,0.571994910780128,0.74291500265913,0.79504962946682,0,2.08284300964557,1.13061588384802,0,1.92582629358047,1.67195973229448,0.775250277507987,0,0,0.402829317109147,0,1.46437234528902,1.10298924103761,2.43042584364528,0.625098097988558,0.898117490504679,1.57656072676651,1.53316637465883,0,0,1.31780417436063,0,0.436094052142534,0,0.12663051166458,0,0.286836620748814,0,0,2.1349799145941,0.24666754841716,0.933633106199299,0.404132016209064,0.163461903113459,0.302714855289863,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0.122834317311768,0.413303124703062,0,0,0,0,0.505008341862199,0.250237039743928,0.277064115484183,0.438977620880838,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0.193260853163297,0.818238361772504,0,2.07355300420312,2.12047629314376,2.67246068599892,3.93912009058408,2.01856680700503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0,0,0,0,0.590789906681404,2.6487785964879,0.245976877086227,1.20097467208968,0.329250856225877,0,0.100528972411631,0.370353780634118,0.651616610620649,0,0,1.27523445472584,0,1.01056513432752,1.38895653772983,2.28304982681518,0,0,0,0.234004265139238,0,0.93733833986777,0.16798212819886,0.425325291727159,0.895585227028483,0.290633938513962,1.53353071666084,0,0.352193736052904,0.621984346622316,1.00883967391873,0.50496973370552,0.063497894292169,0,0,0,0,0,0.285826432630578,0.336393253036082,0.87192013766656,0.07333828582095,0.129271715757778,3.57656445851882,0,0,0,0,0,0.532844358032199,0.142977993658148,0,1.64648067356154,0,0,0,1.50719688529793,0,0.599837947092342,0,0,0,0,0,0,0,0,0.358121926479791,0,0.985153801009636,1.50939302401662,1.54011643535698,0.76228387266739,1.30139853857622,0,0.335032530668698,1.27587750330633,0.749007023947182,2.99161459204025,0.414415513436035,0.12269149171914,0,0.271265023699736,0.415941723061614,0.178428988797162,0.473107245101804,0.117141414992713,0,0,0,0,0,0.0868836144680828,2.54541504701563,0.686286847621712,1.24060815673732,2.5885704098234,0.213455115606889,0.303127571446259,1.66435439510497,0.907170879989041,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.604297247958111,0.40101294060657,0.0920809889358963,0,0,0.262248829918848,0,1.15523005656622,3.13739907670742,8.76835347919564,2.32213583564327,0,1.02056223165909,0.215915916102139,4.62681758070868,1.35473218771926,2.50844886927427,1.52925763827023,0,1.34324852833307,0,0,0.256450125116389,1.96808787419823,0.325378394664303,0,0,0,0.574265537996172,0,0,0.290012154876366,0.154048617114644,0,0,0,0,0.170453254832202,0.178064071293475,0.165284915360978,1.34533047155574,0.255225424989168,0.4046311234222,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0.511795582622668,0,0,0.78494864019923,0,0,0.117812402345686,0,0,0.421258456238981,0,0.487426979262569,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0.422215270595328,0.658589785919804,0,0.699869440489966,0,0,0,0,0,1.68471475667626,0.886860307073351,0,0,0,0.569647187174163,0.714695326373367,0.411362273086194,0,0,0,0.106824071127473,0,0.245040215981032,0.929015875628594,0,3.20138295067864,0,0,0.766021480529467,0,0.324621940274555,0,0,0,0,0,0,0,0.8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| ||
|short_description=p@chr16:77246337..77246389,+ | |short_description=p@chr16:77246337..77246389,+ | ||
}} | }} |
Latest revision as of 12:30, 25 July 2015
Short description: | p@chr16:77246337..77246389, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:77246337..77246389, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.32e-11 | 17 |
kidney epithelial cell | 1.32e-11 | 17 |
epithelial cell of nephron | 4.38e-11 | 15 |
lining cell | 7.17e-10 | 58 |
barrier cell | 7.17e-10 | 58 |
kidney tubule cell | 2.34e-09 | 10 |
nephron tubule epithelial cell | 2.34e-09 | 10 |
embryonic stem cell | 5.58e-09 | 5 |
meso-epithelial cell | 1.61e-07 | 45 |
kidney cortical cell | 4.13e-07 | 12 |
renal cortical epithelial cell | 4.13e-07 | 12 |
endothelial cell | 4.85e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 4.38e-11 | 15 |
renal tubule | 4.38e-11 | 15 |
nephron tubule | 4.38e-11 | 15 |
nephron | 4.38e-11 | 15 |
uriniferous tubule | 4.38e-11 | 15 |
nephrogenic mesenchyme | 4.38e-11 | 15 |
excretory tube | 3.25e-10 | 16 |
kidney epithelium | 3.25e-10 | 16 |
nephron tubule epithelium | 2.34e-09 | 10 |
kidney | 1.37e-07 | 26 |
kidney mesenchyme | 1.37e-07 | 26 |
upper urinary tract | 1.37e-07 | 26 |
kidney rudiment | 1.37e-07 | 26 |
kidney field | 1.37e-07 | 26 |
cortex of kidney | 4.13e-07 | 12 |
renal parenchyma | 4.13e-07 | 12 |
cortex | 4.91e-07 | 15 |
parenchyma | 6.12e-07 | 15 |