FFCP PHASE1:Hg19::chr16:68712449..68712467,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:68712449..68712467,+ | |||
|coexpression_cluster_id=C3585 | |||
|description=CAGE_peak_at_chr16:68712449..68712467,+ | |description=CAGE_peak_at_chr16:68712449..68712467,+ | ||
|id=chr16:68712449..68712467,+ | |id=chr16:68712449..68712467,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.97e-36!254;CL:0002076!4.03e-35!43;CL:0000223!1.83e-24!59;CL:0002368!2.49e-20!13;CL:0002077!1.78e-16!33;CL:0002251!3.82e-14!21;CL:0000148!2.12e-13!10;CL:0000541!2.12e-13!10;CL:0002202!3.54e-13!9;CL:0002632!3.54e-13!9;CL:0002321!6.45e-11!248;CL:0000220!5.89e-10!246;CL:0002159!3.30e-09!13;CL:0000147!5.28e-09!14;CL:0000710!6.09e-09!20;CL:0000082!6.34e-09!19;CL:0002322!2.19e-08!5;CL:0000221!9.82e-08!71;CL:0002231!2.43e-07!3;CL:0000075!2.82e-07!27;CL:0000150!2.84e-07!9;CL:0002328!3.99e-07!3;CL:0000622!5.11e-07!5;CL:0000068!6.12e-07!3;CL:0000069!6.12e-07!3;CL:0000307!6.12e-07!3;CL:0000377!6.12e-07!3;CL:0000076!9.34e-07!62 | |ontology_enrichment_celltype=CL:0000066!6.97e-36!254;CL:0002076!4.03e-35!43;CL:0000223!1.83e-24!59;CL:0002368!2.49e-20!13;CL:0002077!1.78e-16!33;CL:0002251!3.82e-14!21;CL:0000148!2.12e-13!10;CL:0000541!2.12e-13!10;CL:0002202!3.54e-13!9;CL:0002632!3.54e-13!9;CL:0002321!6.45e-11!248;CL:0000220!5.89e-10!246;CL:0002159!3.30e-09!13;CL:0000147!5.28e-09!14;CL:0000710!6.09e-09!20;CL:0000082!6.34e-09!19;CL:0002322!2.19e-08!5;CL:0000221!9.82e-08!71;CL:0002231!2.43e-07!3;CL:0000075!2.82e-07!27;CL:0000150!2.84e-07!9;CL:0002328!3.99e-07!3;CL:0000622!5.11e-07!5;CL:0000068!6.12e-07!3;CL:0000069!6.12e-07!3;CL:0000307!6.12e-07!3;CL:0000377!6.12e-07!3;CL:0000076!9.34e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.53e-31;14!CL:0002368;8.46e-27;13!CL:0002231;1.35e-22;3!CL:0002077;5.09e-20;34!CL:0002076;7.08e-17;42!CL:0000317;4.12e-16;2!CL:1000448;4.12e-16;2!CL:0002308;4.12e-16;2!CL:0002140;4.12e-16;2!CL:0000575;4.60e-15;2!CL:0000362;3.53e-13;9!CL:0002202;4.47e-13;9!CL:0002632;4.47e-13;9!CL:0002328;1.16e-10;3!CL:0000307;1.44e-10;3!CL:0002166;2.37e-10;3!CL:0002567;2.37e-10;3!CL:0000622;5.93e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.51e-31,14;CL:0002368,7.15e-27,13;CL:0002077,2.48e-23,34;CL:0002231,7.56e-23,3;CL:0002076,7.58e-23,42;CL:0000317,4.13e-16,2;CL:1000448,4.13e-16,2;CL:0002308,4.13e-16,2;CL:0002140,4.13e-16,2;CL:0000223,6.12e-16,58;CL:0000066,8.56e-15,253;CL:0000575,1.25e-14,2;CL:0000362,3.54e-13,9;CL:0002202,3.89e-13,9;CL:0002632,3.89e-13,9;CL:0002321,3.20e-12,250;CL:0000221,1.20e-11,72;CL:0002328,8.67e-11,3;CL:0002567,1.22e-10,3;CL:0000068,1.55e-10,3;CL:0000069,1.55e-10,3;CL:0000307,1.55e-10,3;CL:0000377,1.55e-10,3;CL:0002166,2.16e-10,3;CL:0000622,5.94e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;4.77e-11;58!CL:0000377;1.44e-10;3 | |||
|ontology_enrichment_disease=DOID:1749!1.87e-13!14;DOID:305!7.67e-10!106 | |ontology_enrichment_disease=DOID:1749!1.87e-13!14;DOID:305!7.67e-10!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!1.80e-19!72;UBERON:0000065!1.44e-15!53;UBERON:0004119!1.23e-12!169;UBERON:0000925!1.23e-12!169;UBERON:0006595!1.23e-12!169;UBERON:0000072!2.71e-12!46;UBERON:0004807!4.44e-12!28;UBERON:0005153!1.17e-11!37;UBERON:0005157!1.93e-10!51;UBERON:0000464!7.04e-10!104;UBERON:0007196!1.04e-09!14;UBERON:0001558!1.04e-09!14;UBERON:0005178!1.15e-09!34;UBERON:0002224!1.15e-09!34;UBERON:0003729!2.65e-09!5;UBERON:0005181!2.84e-09!35;UBERON:0008947!3.52e-09!38;UBERON:0003258!3.52e-09!38;UBERON:0001007!3.67e-09!155;UBERON:0001555!3.67e-09!155;UBERON:0007026!3.67e-09!155;UBERON:0004802!6.34e-09!19;UBERON:0000115!6.34e-09!19;UBERON:0000161!1.41e-08!35;UBERON:0000166!2.57e-08!21;UBERON:0003343!6.33e-08!4;UBERON:0004785!6.33e-08!4;UBERON:0000974!1.12e-07!10;UBERON:0002048!2.25e-07!22;UBERON:0000117!2.25e-07!22;UBERON:0000171!2.25e-07!22;UBERON:0000170!2.25e-07!22;UBERON:0005597!2.25e-07!22;UBERON:0000118!2.25e-07!22;UBERON:0004815!3.99e-07!3;UBERON:0002031!3.99e-07!3;UBERON:0000077!4.77e-07!130;UBERON:0005911!5.40e-07!82;UBERON:0000165!9.49e-07!28;UBERON:0000930!9.49e-07!28;UBERON:0000466!9.73e-07!126 | |ontology_enrichment_uberon=UBERON:0001004!1.80e-19!72;UBERON:0000065!1.44e-15!53;UBERON:0004119!1.23e-12!169;UBERON:0000925!1.23e-12!169;UBERON:0006595!1.23e-12!169;UBERON:0000072!2.71e-12!46;UBERON:0004807!4.44e-12!28;UBERON:0005153!1.17e-11!37;UBERON:0005157!1.93e-10!51;UBERON:0000464!7.04e-10!104;UBERON:0007196!1.04e-09!14;UBERON:0001558!1.04e-09!14;UBERON:0005178!1.15e-09!34;UBERON:0002224!1.15e-09!34;UBERON:0003729!2.65e-09!5;UBERON:0005181!2.84e-09!35;UBERON:0008947!3.52e-09!38;UBERON:0003258!3.52e-09!38;UBERON:0001007!3.67e-09!155;UBERON:0001555!3.67e-09!155;UBERON:0007026!3.67e-09!155;UBERON:0004802!6.34e-09!19;UBERON:0000115!6.34e-09!19;UBERON:0000161!1.41e-08!35;UBERON:0000166!2.57e-08!21;UBERON:0003343!6.33e-08!4;UBERON:0004785!6.33e-08!4;UBERON:0000974!1.12e-07!10;UBERON:0002048!2.25e-07!22;UBERON:0000117!2.25e-07!22;UBERON:0000171!2.25e-07!22;UBERON:0000170!2.25e-07!22;UBERON:0005597!2.25e-07!22;UBERON:0000118!2.25e-07!22;UBERON:0004815!3.99e-07!3;UBERON:0002031!3.99e-07!3;UBERON:0000077!4.77e-07!130;UBERON:0005911!5.40e-07!82;UBERON:0000165!9.49e-07!28;UBERON:0000930!9.49e-07!28;UBERON:0000466!9.73e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0002419;4.12e-16;2!UBERON:0007771;4.12e-16;2!UBERON:0003297;4.12e-16;2!UBERON:0001821;4.12e-16;2!UBERON:0003487;4.12e-16;2!UBERON:0001820;4.12e-16;2!UBERON:0004815;1.16e-10;3!UBERON:0002031;1.16e-10;3!UBERON:0001708;5.61e-08;4!UBERON:0000964;5.61e-08;4!UBERON:0010409;5.61e-08;4!UBERON:0008895;5.61e-08;4!UBERON:0001003;5.86e-08;15!UBERON:0007376;5.86e-08;15!UBERON:0007196;6.72e-08;15!UBERON:0001558;6.72e-08;15!UBERON:0002185;9.97e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,4.13e-16,2;UBERON:0007771,4.13e-16,2;UBERON:0003297,4.13e-16,2;UBERON:0001821,4.13e-16,2;UBERON:0003487,4.13e-16,2;UBERON:0001820,4.13e-16,2;UBERON:0005089,4.13e-16,2;UBERON:0005088,4.13e-16,2;UBERON:0004815,8.67e-11,3;UBERON:0002031,8.67e-11,3;UBERON:0003102,8.38e-10,99;UBERON:0005157,1.16e-08,47;UBERON:0001708,5.24e-08,4;UBERON:0008895,5.24e-08,4;UBERON:0001003,5.87e-08,15;UBERON:0007376,5.87e-08,15;UBERON:0007383,5.87e-08,15;UBERON:0007196,6.20e-08,15;UBERON:0001558,6.20e-08,15;UBERON:0000964,9.19e-08,4;UBERON:0010409,9.19e-08,4;UBERON:0004348,9.19e-08,4;UBERON:0005427,9.19e-08,4;UBERON:0002185,8.41e-07,5 | |||
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| ||
|short_description=p@chr16:68712449..68712467,+ | |short_description=p@chr16:68712449..68712467,+ | ||
}} | }} |
Latest revision as of 11:46, 25 July 2015
Short description: | p@chr16:68712449..68712467, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:68712449..68712467, + |
Coexpression cluster: | C3585_Prostate_Sebocyte_oral_Small_Keratinocyte_Tracheal_Bronchial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.51e-31 | 14 |
respiratory epithelial cell | 7.15e-27 | 13 |
ecto-epithelial cell | 2.48e-23 | 34 |
epithelial cell of prostate | 7.56e-23 | 3 |
endo-epithelial cell | 7.58e-23 | 42 |
sebum secreting cell | 4.13e-16 | 2 |
epithelial cell of sweat gland | 4.13e-16 | 2 |
epithelial cell of skin gland | 4.13e-16 | 2 |
acinar cell of sebaceous gland | 4.13e-16 | 2 |
endodermal cell | 6.12e-16 | 58 |
epithelial cell | 8.56e-15 | 253 |
corneal epithelial cell | 1.25e-14 | 2 |
epidermal cell | 3.54e-13 | 9 |
epithelial cell of tracheobronchial tree | 3.89e-13 | 9 |
epithelial cell of lower respiratory tract | 3.89e-13 | 9 |
embryonic cell | 3.20e-12 | 250 |
ectodermal cell | 1.20e-11 | 72 |
bronchial epithelial cell | 8.67e-11 | 3 |
light melanocyte | 1.22e-10 | 3 |
duct epithelial cell | 1.55e-10 | 3 |
branched duct epithelial cell | 1.55e-10 | 3 |
tracheal epithelial cell | 1.55e-10 | 3 |
tracheoblast | 1.55e-10 | 3 |
epithelial cell of Malassez | 2.16e-10 | 3 |
acinar cell | 5.94e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin gland | 4.13e-16 | 2 |
epidermis gland | 4.13e-16 | 2 |
gland of integumental system | 4.13e-16 | 2 |
sebaceous gland | 4.13e-16 | 2 |
skin sebaceous gland | 4.13e-16 | 2 |
sweat gland | 4.13e-16 | 2 |
sweat gland placode | 4.13e-16 | 2 |
sebaceous gland placode | 4.13e-16 | 2 |
lower respiratory tract epithelium | 8.67e-11 | 3 |
epithelium of bronchus | 8.67e-11 | 3 |
surface structure | 8.38e-10 | 99 |
epithelial fold | 1.16e-08 | 47 |
jaw skeleton | 5.24e-08 | 4 |
splanchnocranium | 5.24e-08 | 4 |
skin epidermis | 5.87e-08 | 15 |
outer epithelium | 5.87e-08 | 15 |
enveloping layer of ectoderm | 5.87e-08 | 15 |
tracheobronchial tree | 6.20e-08 | 15 |
lower respiratory tract | 6.20e-08 | 15 |
cornea | 9.19e-08 | 4 |
eye surface | 9.19e-08 | 4 |
optic eminence | 9.19e-08 | 4 |
corneal primordium | 9.19e-08 | 4 |
bronchus | 8.41e-07 | 5 |