FFCP PHASE1:Hg19::chr12:74794757..74794765,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:74794757..74794765,- | |||
|description=CAGE_peak_at_chr12:74794757..74794765,- | |description=CAGE_peak_at_chr12:74794757..74794765,- | ||
|id=chr12:74794757..74794765,- | |id=chr12:74794757..74794765,- | ||
|ontology_enrichment_celltype=CL:0000082!3.71e-07!19;CL:0000039!7.59e-07!7;CL:0000586!7.59e-07!7 | |ontology_enrichment_celltype=CL:0000082!3.71e-07!19;CL:0000039!7.59e-07!7;CL:0000586!7.59e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000082;1.54e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,1.34e-08,19;CL:0000066,7.24e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;5.87e-09;30 | |||
|ontology_enrichment_disease=DOID:305!1.02e-24!106;DOID:0050687!9.51e-21!143;DOID:162!5.32e-13!235;DOID:14566!2.64e-12!239;DOID:0050615!5.41e-11!16;DOID:1324!7.39e-10!15;DOID:3905!1.24e-09!9;DOID:1325!2.63e-09!7;DOID:3904!2.63e-09!7 | |ontology_enrichment_disease=DOID:305!1.02e-24!106;DOID:0050687!9.51e-21!143;DOID:162!5.32e-13!235;DOID:14566!2.64e-12!239;DOID:0050615!5.41e-11!16;DOID:1324!7.39e-10!15;DOID:3905!1.24e-09!9;DOID:1325!2.63e-09!7;DOID:3904!2.63e-09!7 | ||
|ontology_enrichment_disease_v019=DOID:0050615;1.02e-13;16!DOID:1324;5.51e-11;15!DOID:305;2.42e-10;106!DOID:3905;9.86e-09;9 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.92e-24,106;DOID:0050687,1.43e-16,143;DOID:0050615,9.36e-14,16;DOID:162,1.70e-11,235;DOID:14566,4.03e-11,239;DOID:1324,4.62e-11,15;DOID:3905,7.67e-09,9 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.38e-17!57;UBERON:0005068!1.38e-17!57;UBERON:0006241!1.38e-17!57;UBERON:0007135!1.38e-17!57;UBERON:0002616!9.54e-17!59;UBERON:0002780!1.94e-16!41;UBERON:0001890!1.94e-16!41;UBERON:0006240!1.94e-16!41;UBERON:0003080!7.41e-16!42;UBERON:0000955!1.36e-15!69;UBERON:0006238!1.36e-15!69;UBERON:0001017!3.71e-15!82;UBERON:0002020!2.27e-14!34;UBERON:0003528!2.27e-14!34;UBERON:0001893!3.40e-14!34;UBERON:0005743!6.48e-14!86;UBERON:0000073!2.01e-13!94;UBERON:0001016!2.01e-13!94;UBERON:0002791!2.25e-13!33;UBERON:0001869!3.71e-12!32;UBERON:0003075!1.27e-10!86;UBERON:0007284!1.27e-10!86;UBERON:0002346!1.95e-10!90;UBERON:0002308!1.22e-09!9;UBERON:0000125!1.22e-09!9;UBERON:0002420!2.20e-09!9;UBERON:0007245!2.20e-09!9;UBERON:0010009!2.20e-09!9;UBERON:0010011!2.20e-09!9;UBERON:0000454!2.20e-09!9;UBERON:0003056!2.76e-09!61;UBERON:0007023!2.78e-09!115;UBERON:0002619!3.80e-09!22;UBERON:0000956!1.21e-07!25;UBERON:0000203!1.21e-07!25;UBERON:0001950!2.38e-07!20;UBERON:0000349!3.17e-07!5;UBERON:0000025!3.22e-07!194;UBERON:0000033!3.24e-07!123;UBERON:0009663!3.44e-07!7;UBERON:0004802!3.71e-07!19;UBERON:0000115!3.71e-07!19;UBERON:0000153!7.07e-07!129;UBERON:0007811!7.07e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005162;1.04e-10;2!UBERON:0000122;1.04e-10;2!UBERON:0001897;4.01e-10;2!UBERON:0001875;4.01e-10;2!UBERON:0006514;4.01e-10;2!UBERON:0010225;4.01e-10;2!UBERON:0004802;1.54e-08;19!UBERON:0000115;1.54e-08;19!UBERON:0000125;2.65e-08;9!UBERON:0002308;2.65e-08;9!UBERON:0002048;2.74e-07;22!UBERON:0004807;2.74e-07;22!UBERON:0000117;2.74e-07;22!UBERON:0000171;2.74e-07;22!UBERON:0000170;2.74e-07;22!UBERON:0000988;5.05e-07;3!UBERON:0002294;5.52e-07;7!UBERON:0001173;5.52e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,1.29e-10,2;UBERON:0000122,1.29e-10,2;UBERON:0001875,1.80e-10,2;UBERON:0006514,1.80e-10,2;UBERON:0001897,2.64e-10,2;UBERON:0010225,2.64e-10,2;UBERON:0004802,1.34e-08,19;UBERON:0000115,1.34e-08,19;UBERON:0000125,1.47e-08,9;UBERON:0002308,1.47e-08,9;UBERON:0000073,3.77e-08,53;UBERON:0002616,3.77e-08,53;UBERON:0001049,1.29e-07,56;UBERON:0005068,1.29e-07,56;UBERON:0006241,1.29e-07,56;UBERON:0007135,1.29e-07,56;UBERON:0002780,2.18e-07,41;UBERON:0001890,2.18e-07,41;UBERON:0003080,2.18e-07,41;UBERON:0006240,2.18e-07,41;UBERON:0002048,2.44e-07,22;UBERON:0000117,2.44e-07,22;UBERON:0000171,2.44e-07,22;UBERON:0000170,2.44e-07,22;UBERON:0005597,2.44e-07,22;UBERON:0000118,2.44e-07,22;UBERON:0000988,6.67e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.397589304964456,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41480848072388,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.852408440419239,0.23874448473769,0,0,0.994147647766298,0.422008249231538,0,0,6.96713846822378,0,0,0,0,0,0,0.0898683511473268,2.68531762013414,0,0,0,0,0,0.371072392647405,0,0.520855522170466,0.262379999988587,0,1.593108275997,3.81380475439149,0.236387681767936,0,0,0.173624994933292,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0.69169171316418,0,0.325942115766024,0,0.0915975934018623,0,0,0,0,0.225595660617181,0,0,1.3282761290693,0.476809736941136,0,0.326465616318295,0.706765357169704,0,0,0,0,0.296521128680622,0,0,1.28062152663286,0,1.40558667435203,0,0.19566461893209,0,0,0,0,0,0.60129367765797,0.207376382794494,0,0,0.313932918407225,0,1.42304773014896,0.416024019039416,0,0,0,0,0,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0,0,0,0.759729551470544,9.77756913674015,0.961905843018405,0,0.39961921916426,3.31407959454444,0,1.20116498503375,1.00838358591705,2.60930324687408,0,0,0.104602846312333,0,0.866851769704557,1.80126086612937,1.50595916781192,0,0,0,0,0.458320848023367,0,0,0,0,0,0,1.16495949527454,0,0.0824158583811665,0.0674035438541849,0.590564889088493,0,1.59045937961861,0.408610218334727,0.321506296930038,0.550157746388935,0,0.2249738915515,0,0.242998226632099,0,0,0.0524545881349981,6.33602019116439,0.717149357331379,0,0,0,0,0,0,0,0,0.164185041498678,0.340776043570843,0,0,0,1.42211251997706,0.92562821219883,3.76391043345525,0,0,0,0,0,0.592834895693833,0,0,0,0,0,0,1.25643277000187,0,0.610131324509816,0.3755727921195,0,0.665574309221114,0.434674820589684,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.584580926518165,0,0,0,2.94927490504463,0,0,0,2.75543967457305,0,0,0,0,0,0,0.629063767423586,0,0,0,0.247871528518004,0,0,0,0,0,0,0.449604575675217,0,0.159633859057151,1.02558182120378,0,0.276629009856872,0.807378228159255,7.13847101295772,0,0.707818340086442,0,0,0,0.690359926060101,0.198916222116275,0,0,0,0,0,3.69640215542613,0.337687923091973,0,0.206686796501184,0.19024743058172,0,0,0,0,0.255524855279191,0,0.672567444437648,0,0,0.177404740325278,0,0,1.01954599465248,0.328863867814245,2.12748913591143,0,0,0,0.280272163313789,0,0,0,0,0,0,0.347716544605159,0,0,0,0,0.430227358820278,0,0,0,1.3746412112643,0,0,0.223710863595585,0.883352102537187,5.9739783241312,0,0,0,0,0,2.58636007709779,0.118920090777569,1.46829906650648,0.329821550236287,1.50962843566674,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,1.2498775702396,0,1.28386186702669,0,0,1.72007499781742,0,0,0,0,0,0,0,0.504665699340316,1.85751472338282,2.28057301820587,0.917899467677836,0.26721740526556,1.28652859348783,0.752122617877125,0.0757786982182394,0,1.65833887891756,1.34462894620464,0,0,0,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0,0.853818767021724,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.397589304964456,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41480848072388,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.852408440419239,0.23874448473769,0,0,0.994147647766298,0.422008249231538,0,0,6.96713846822378,0,0,0,0,0,0,0.0898683511473268,2.68531762013414,0,0,0,0,0,0.371072392647405,0,0.520855522170466,0.262379999988587,0,1.593108275997,3.81380475439149,0.236387681767936,0,0,0.173624994933292,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0.69169171316418,0,0.325942115766024,0,0.0915975934018623,0,0,0,0,0.225595660617181,0,0,1.3282761290693,0.476809736941136,0,0.326465616318295,0.706765357169704,0,0,0,0,0.296521128680622,0,0,1.28062152663286,0,1.40558667435203,0,0.19566461893209,0,0,0,0,0,0.60129367765797,0.207376382794494,0,0,0.313932918407225,0,1.42304773014896,0.416024019039416,0,0,0,0,0,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0,0,0,0.759729551470544,9.77756913674015,0.961905843018405,0,0.39961921916426,3.31407959454444,0,1.20116498503375,1.00838358591705,2.60930324687408,0,0,0.104602846312333,0,0.866851769704557,1.80126086612937,1.50595916781192,0,0,0,0,0.458320848023367,0,0,0,0,0,0,1.16495949527454,0,0.0824158583811665,0.0674035438541849,0.590564889088493,0,1.59045937961861,0.408610218334727,0.321506296930038,0.550157746388935,0,0.2249738915515,0,0.242998226632099,0,0,0.0524545881349981,6.33602019116439,0.717149357331379,0,0,0,0,0,0,0,0,0.164185041498678,0.340776043570843,0,0,0,1.42211251997706,0.92562821219883,3.76391043345525,0,0,0,0,0,0.592834895693833,0,0,0,0,0,0,1.25643277000187,0,0.610131324509816,0.3755727921195,0,0.665574309221114,0.434674820589684,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.584580926518165,0,0,0,2.94927490504463,0,0,0,2.75543967457305,0,0,0,0,0,0,0.629063767423586,0,0,0,0.247871528518004,0,0,0,0,0,0,0.449604575675217,0,0.159633859057151,1.02558182120378,0,0.276629009856872,0.807378228159255,7.13847101295772,0,0.707818340086442,0,0,0,0.690359926060101,0.198916222116275,0,0,0,0,0,3.69640215542613,0.337687923091973,0,0.206686796501184,0.19024743058172,0,0,0,0,0.255524855279191,0,0.672567444437648,0,0,0.177404740325278,0,0,1.01954599465248,0.328863867814245,2.12748913591143,0,0,0,0.280272163313789,0,0,0,0,0,0,0.347716544605159,0,0,0,0,0.430227358820278,0,0,0,1.3746412112643,0,0,0.223710863595585,0.883352102537187,5.9739783241312,0,0,0,0,0,2.58636007709779,0.118920090777569,1.46829906650648,0.329821550236287,1.50962843566674,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,1.2498775702396,0,1.28386186702669,0,0,1.72007499781742,0,0,0,0,0,0,0,0.504665699340316,1.85751472338282,2.28057301820587,0.917899467677836,0.26721740526556,1.28652859348783,0.752122617877125,0.0757786982182394,0,1.65833887891756,1.34462894620464,0,0,0,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0,0.853818767021724,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:74794757..74794765,- | |short_description=p@chr12:74794757..74794765,- | ||
}} | }} |
Latest revision as of 12:20, 24 July 2015
Short description: | p@chr12:74794757..74794765, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:74794757..74794765, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 1.34e-08 | 19 |
epithelial cell | 7.24e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 1.29e-10 | 2 |
neuron projection bundle | 1.29e-10 | 2 |
globus pallidus | 1.80e-10 | 2 |
pallidum | 1.80e-10 | 2 |
dorsal plus ventral thalamus | 2.64e-10 | 2 |
thalamic complex | 2.64e-10 | 2 |
respiratory tract epithelium | 1.34e-08 | 19 |
lung epithelium | 1.34e-08 | 19 |
neural nucleus | 1.47e-08 | 9 |
nucleus of brain | 1.47e-08 | 9 |
regional part of nervous system | 3.77e-08 | 53 |
regional part of brain | 3.77e-08 | 53 |
neural tube | 1.29e-07 | 56 |
neural rod | 1.29e-07 | 56 |
future spinal cord | 1.29e-07 | 56 |
neural keel | 1.29e-07 | 56 |
regional part of forebrain | 2.18e-07 | 41 |
forebrain | 2.18e-07 | 41 |
anterior neural tube | 2.18e-07 | 41 |
future forebrain | 2.18e-07 | 41 |
lung | 2.44e-07 | 22 |
respiratory tube | 2.44e-07 | 22 |
respiration organ | 2.44e-07 | 22 |
pair of lungs | 2.44e-07 | 22 |
lung primordium | 2.44e-07 | 22 |
lung bud | 2.44e-07 | 22 |
pons | 6.67e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.92e-24 | 106 |
cell type cancer | 1.43e-16 | 143 |
respiratory system cancer | 9.36e-14 | 16 |
cancer | 1.70e-11 | 235 |
disease of cellular proliferation | 4.03e-11 | 239 |
lung cancer | 4.62e-11 | 15 |
lung carcinoma | 7.67e-09 | 9 |