FFCP PHASE1:Hg19::chr12:4108768..4108811,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:4108768..4108811,- | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_at_chr12:4108768..4108811,- | |description=CAGE_peak_at_chr12:4108768..4108811,- | ||
|id=chr12:4108768..4108811,- | |id=chr12:4108768..4108811,- | ||
|ontology_enrichment_celltype=CL:0000624!3.90e-19!6;CL:0000898!1.87e-10!3;CL:0000791!5.25e-10!18;CL:0000789!5.25e-10!18;CL:0002420!5.25e-10!18;CL:0002419!5.25e-10!18;CL:0000790!5.25e-10!18;CL:0000623!7.86e-10!3;CL:0000825!7.86e-10!3;CL:0000815!2.16e-07!2;CL:0000792!2.16e-07!2;CL:0002677!2.16e-07!2;CL:0000084!8.46e-07!25;CL:0000827!8.46e-07!25 | |ontology_enrichment_celltype=CL:0000624!3.90e-19!6;CL:0000898!1.87e-10!3;CL:0000791!5.25e-10!18;CL:0000789!5.25e-10!18;CL:0002420!5.25e-10!18;CL:0002419!5.25e-10!18;CL:0000790!5.25e-10!18;CL:0000623!7.86e-10!3;CL:0000825!7.86e-10!3;CL:0000815!2.16e-07!2;CL:0000792!2.16e-07!2;CL:0002677!2.16e-07!2;CL:0000084!8.46e-07!25;CL:0000827!8.46e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000895;9.48e-18;1!CL:0000624;6.34e-12;6!CL:0000898;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,5.26e-18,1;CL:0000895,5.26e-18,1;CL:0002436,5.26e-18,1;CL:0002427,5.26e-18,1;CL:0002428,5.26e-18,1;CL:0002429,5.26e-18,1;CL:0002433,5.26e-18,1;CL:0002431,5.26e-18,1;CL:0002432,5.26e-18,1;CL:0000624,5.68e-12,6;CL:0000893,1.12e-09,2;CL:0002489,1.12e-09,2;CL:0000809,1.12e-09,2;CL:0000808,1.12e-09,2;CL:0000894,1.12e-09,2;CL:0000806,1.12e-09,2;CL:0000807,1.12e-09,2;CL:0000805,1.12e-09,2;CL:0002425,1.12e-09,2;CL:0000898,7.28e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002427;9.48e-18;1!UBERON:0007297;7.98e-10;2!UBERON:0008814;8.69e-10;2!UBERON:0010056;8.69e-10;2!CL:0002425;1.51e-09;2 | |||
|ontology_enrichment_disease=DOID:299!2.77e-08!25;DOID:5093!4.48e-08!4;DOID:1612!4.48e-08!4 | |ontology_enrichment_disease=DOID:299!2.77e-08!25;DOID:5093!4.48e-08!4;DOID:1612!4.48e-08!4 | ||
|ontology_enrichment_disease_v019=DOID:5093;1.45e-17;4!DOID:1612;1.45e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.22e-17,4;DOID:1612,1.22e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0000007!2.86e-07!2;UBERON:0005631!3.86e-07!14;UBERON:0000158!3.86e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.66e-18;1!UBERON:0000310;1.37e-07;10!UBERON:0001443;5.63e-07;11!UBERON:0006947;5.80e-07;3!UBERON:0004054;5.80e-07;3!UBERON:0001723;6.14e-07;3!UBERON:0001033;6.14e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,2.66e-18,1;UBERON:0000974,1.16e-07,10;UBERON:0001042,1.16e-07,10;UBERON:0009145,1.16e-07,10;UBERON:0000310,1.29e-07,10;UBERON:0006562,4.85e-07,11;UBERON:0001443,5.31e-07,11;UBERON:0006947,5.80e-07,3;UBERON:0004054,5.80e-07,3;UBERON:0001723,6.14e-07,3;UBERON:0001033,6.14e-07,3;UBERON:0010056,6.14e-07,3 | |||
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| ||
|short_description=p@chr12:4108768..4108811,- | |short_description=p@chr12:4108768..4108811,- | ||
}} | }} |
Latest revision as of 08:23, 24 July 2015
Short description: | p@chr12:4108768..4108811, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:4108768..4108811, - |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 5.26e-18 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.26e-18 | 1 |
mature CD4 single-positive thymocyte | 5.26e-18 | 1 |
resting double-positive thymocyte | 5.26e-18 | 1 |
double-positive blast | 5.26e-18 | 1 |
CD69-positive double-positive thymocyte | 5.26e-18 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.26e-18 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.26e-18 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.26e-18 | 1 |
CD4-positive, alpha-beta T cell | 5.68e-12 | 6 |
thymocyte | 1.12e-09 | 2 |
double negative thymocyte | 1.12e-09 | 2 |
double-positive, alpha-beta thymocyte | 1.12e-09 | 2 |
DN4 thymocyte | 1.12e-09 | 2 |
DN1 thymic pro-T cell | 1.12e-09 | 2 |
DN2 thymocyte | 1.12e-09 | 2 |
DN3 thymocyte | 1.12e-09 | 2 |
immature single positive thymocyte | 1.12e-09 | 2 |
early T lineage precursor | 1.12e-09 | 2 |
naive T cell | 7.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
epididymis | 2.66e-18 | 1 |
neck | 1.16e-07 | 10 |
chordate pharynx | 1.16e-07 | 10 |
pharyngeal region of foregut | 1.16e-07 | 10 |
breast | 1.29e-07 | 10 |
pharynx | 4.85e-07 | 11 |
chest | 5.31e-07 | 11 |
male genital duct | 5.80e-07 | 3 |
internal male genitalia | 5.80e-07 | 3 |
tongue | 6.14e-07 | 3 |
gustatory system | 6.14e-07 | 3 |
future tongue | 6.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.22e-17 | 4 |
breast cancer | 1.22e-17 | 4 |