FFCP PHASE1:Hg19::chr12:105258734..105258750,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:105258734..105258750,+ | |||
|coexpression_cluster_id=C401 | |||
|description=CAGE_peak_at_chr12:105258734..105258750,+ | |||
|id=chr12:105258734..105258750,+ | |||
|ontology_enrichment_celltype=CL:0000746!9.52e-13!3;CL:0000513!9.52e-13!3;CL:0002504!1.62e-11!3;CL:1000279!1.62e-11!3;CL:1000280!1.62e-11!3;CL:0000737!1.17e-09!4;CL:0002549!5.58e-09!2;CL:0002195!6.02e-09!2;CL:0002571!6.02e-09!2;CL:0002494!2.13e-08!16;CL:0000187!2.60e-07!54;CL:0000680!8.46e-07!57;CL:0000056!8.46e-07!57;CL:0000355!8.46e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002195;1.38e-33;2!CL:0002571;1.38e-33;2!CL:0002494;4.69e-26;16!CL:0002548;2.23e-25;6!CL:0000746;1.77e-23;3!CL:0000737;7.08e-18;4!CL:0002616;1.03e-17;1!CL:0002549;1.07e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,1.64e-33,2;CL:0002571,1.64e-33,2;CL:0002494,5.49e-26,16;CL:0002548,2.75e-25,6;CL:0000746,1.88e-23,3;CL:0000513,1.88e-23,3;CL:0000737,7.39e-18,4;CL:0002616,8.72e-18,1;CL:0002549,1.03e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000513;1.77e-23;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005284!1.73e-12!5;UBERON:0003947!5.58e-09!2;UBERON:0005629!5.58e-09!2;UBERON:0005358!5.58e-09!2;UBERON:0001886!5.58e-09!2;UBERON:0004086!5.58e-09!2;UBERON:0005282!5.58e-09!2;UBERON:0005281!5.58e-09!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;5.37e-19;22!UBERON:0000029;4.83e-18;1!UBERON:0000996;1.03e-17;1!UBERON:0007100;9.85e-17;25!UBERON:0005629;1.07e-09;2!UBERON:0005358;1.07e-09;2!UBERON:0001886;1.07e-09;2!UBERON:0004086;1.07e-09;2!UBERON:0005282;1.07e-09;2!UBERON:0005281;1.07e-09;2!UBERON:0005406;1.57e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,5.26e-18,1;UBERON:0000996,6.23e-18,1;UBERON:0000948,2.22e-17,24;UBERON:0005498,2.22e-17,24;UBERON:0004140,2.22e-17,24;UBERON:0009881,2.22e-17,24;UBERON:0004141,2.22e-17,24;UBERON:0003084,2.22e-17,24;UBERON:0007005,2.22e-17,24;UBERON:0004139,2.22e-17,24;UBERON:0004291,2.22e-17,24;UBERON:0007100,1.84e-15,27;UBERON:0005629,1.03e-09,2;UBERON:0005358,1.03e-09,2;UBERON:0001886,1.03e-09,2;UBERON:0004086,1.03e-09,2;UBERON:0005282,1.03e-09,2;UBERON:0005281,1.03e-09,2;UBERON:0005406,1.44e-09,2 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,1.74467704820074,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,3.35350429851818,0.895037932904712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,3.7345324247972,1.0776853765575,1.14423332179421,0.908144565869588,2.88087962239999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85871391755592,0,0,0,1.06617584622764,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,2.48083010905975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59135266258303,0.267964130156178,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,1.99727032255654,0.603821380773079,0 | |||
|short_description=p@chr12:105258734..105258750,+ | |||
}} |
Latest revision as of 04:21, 24 July 2015
Short description: | p@chr12:105258734..105258750, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105258734..105258750, + |
Coexpression cluster: | C401_Cardiac_pineal_occipital_globus_Hepatocyte_Osteoblast_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 1.64e-33 | 2 |
hepatic mesenchymal stem cell | 1.64e-33 | 2 |
cardiocyte | 5.49e-26 | 16 |
cardiac fibroblast | 2.75e-25 | 6 |
cardiac muscle cell | 1.88e-23 | 3 |
cardiac muscle myoblast | 1.88e-23 | 3 |
striated muscle cell | 7.39e-18 | 4 |
perirenal adipocyte cell | 8.72e-18 | 1 |
fibroblast of choroid plexus | 1.03e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lymph node | 5.26e-18 | 1 |
vagina | 6.23e-18 | 1 |
heart | 2.22e-17 | 24 |
primitive heart tube | 2.22e-17 | 24 |
primary heart field | 2.22e-17 | 24 |
anterior lateral plate mesoderm | 2.22e-17 | 24 |
heart tube | 2.22e-17 | 24 |
heart primordium | 2.22e-17 | 24 |
cardiac mesoderm | 2.22e-17 | 24 |
cardiogenic plate | 2.22e-17 | 24 |
heart rudiment | 2.22e-17 | 24 |
primary circulatory organ | 1.84e-15 | 27 |
vascular plexus | 1.03e-09 | 2 |
ventricle of nervous system | 1.03e-09 | 2 |
choroid plexus | 1.03e-09 | 2 |
brain ventricle | 1.03e-09 | 2 |
ventricular system of brain | 1.03e-09 | 2 |
ventricular system of central nervous system | 1.03e-09 | 2 |
perirenal fat | 1.44e-09 | 2 |