FFCP PHASE1:Hg19::chr11:47256459..47256470,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:47256459..47256470,+ | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr11:47256459..47256470,+ | |description=CAGE_peak_at_chr11:47256459..47256470,+ | ||
|id=chr11:47256459..47256470,+ | |id=chr11:47256459..47256470,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.62e-23;3!CL:0002202;1.04e-08;9!CL:0002632;1.04e-08;9!CL:0000182;8.38e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.62e-23,3;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9;CL:0000182,8.38e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.27e-23;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;3.61e-34;2!DOID:3908;1.40e-14;5!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,3.61e-34,2;DOID:3908,1.40e-14,5;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0002367!1.79e-07!11;UBERON:0010147!1.79e-07!11;UBERON:0009846!1.79e-07!11;UBERON:0003353!1.79e-07!11;UBERON:0004902!1.79e-07!11;UBERON:0003820!1.79e-07!11;UBERON:0009847!1.79e-07!11;UBERON:0003937!8.00e-07!12;UBERON:0005399!8.00e-07!12 | |ontology_enrichment_uberon=UBERON:0002367!1.79e-07!11;UBERON:0010147!1.79e-07!11;UBERON:0009846!1.79e-07!11;UBERON:0003353!1.79e-07!11;UBERON:0004902!1.79e-07!11;UBERON:0003820!1.79e-07!11;UBERON:0009847!1.79e-07!11;UBERON:0003937!8.00e-07!12;UBERON:0005399!8.00e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.61e-34;2!UBERON:0002173;3.61e-34;2!UBERON:0002186;3.61e-34;2!UBERON:0004821;2.62e-23;3!UBERON:0007499;2.62e-23;3!UBERON:0003215;2.62e-23;3!UBERON:0010368;2.62e-23;3!UBERON:0009911;2.62e-23;3!UBERON:0002299;2.62e-23;3!UBERON:0006524;2.62e-23;3!UBERON:0008874;2.62e-23;3!UBERON:0002169;2.62e-23;3!UBERON:0004894;2.62e-23;3!UBERON:0009856;7.35e-18;4!UBERON:0002037;2.45e-12;6!UBERON:0002680;1.12e-08;9!UBERON:0001895;1.12e-08;9!UBERON:0000058;5.73e-08;10!UBERON:0004733;7.92e-07;12!UBERON:0002028;7.92e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.61e-34,2;UBERON:0002173,3.61e-34,2;UBERON:0002186,3.61e-34,2;UBERON:0004821,2.62e-23,3;UBERON:0003215,2.62e-23,3;UBERON:0010368,2.62e-23,3;UBERON:0009911,2.62e-23,3;UBERON:0002299,2.62e-23,3;UBERON:0006524,2.62e-23,3;UBERON:0008874,2.62e-23,3;UBERON:0002169,2.62e-23,3;UBERON:0004894,2.62e-23,3;UBERON:0002037,2.45e-12,6;UBERON:0006215,2.45e-12,6;UBERON:0007499,1.09e-11,25;UBERON:0009856,2.77e-11,26;UBERON:0002680,1.12e-08,9;UBERON:0001895,1.12e-08,9;UBERON:0010092,1.12e-08,9;UBERON:0004733,7.92e-07,12;UBERON:0002028,7.92e-07,12;UBERON:0007277,7.92e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3433519275463,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0.291604613383254,0,0,0,0,0.774054819518572,3.25102380848902,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0.58620893471233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945550727071746,0.222462803784138,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3433519275463,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0.291604613383254,0,0,0,0,0.774054819518572,3.25102380848902,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0.58620893471233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945550727071746,0.222462803784138,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr11:47256459..47256470,+ | |short_description=p@chr11:47256459..47256470,+ | ||
}} | }} |
Latest revision as of 22:33, 23 July 2015
Short description: | p@chr11:47256459..47256470, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:47256459..47256470, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.62e-23 | 3 |
epithelial cell of tracheobronchial tree | 1.04e-08 | 9 |
epithelial cell of lower respiratory tract | 1.04e-08 | 9 |
hepatocyte | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.61e-34 | 2 |
alveolar duct | 3.61e-34 | 2 |
bronchiole | 3.61e-34 | 2 |
pulmonary alveolus epithelium | 2.62e-23 | 3 |
alveolus | 2.62e-23 | 3 |
pulmonary lobule | 2.62e-23 | 3 |
lobule | 2.62e-23 | 3 |
alveolus of lung | 2.62e-23 | 3 |
alveolar system | 2.62e-23 | 3 |
pulmonary acinus | 2.62e-23 | 3 |
alveolar sac | 2.62e-23 | 3 |
alveolar wall | 2.62e-23 | 3 |
cerebellum | 2.45e-12 | 6 |
rhombic lip | 2.45e-12 | 6 |
epithelial sac | 1.09e-11 | 25 |
sac | 2.77e-11 | 26 |
regional part of metencephalon | 1.12e-08 | 9 |
metencephalon | 1.12e-08 | 9 |
future metencephalon | 1.12e-08 | 9 |
segmental subdivision of hindbrain | 7.92e-07 | 12 |
hindbrain | 7.92e-07 | 12 |
presumptive hindbrain | 7.92e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 3.61e-34 | 2 |
non-small cell lung carcinoma | 1.40e-14 | 5 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |