FFCP PHASE1:Hg19::chr11:123325343..123325357,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=237bp_to_ENST00000525757,uc001pyv.1_5end | |association_with_transcript=237bp_to_ENST00000525757,uc001pyv.1_5end | ||
|cluster_id=chr11:123325343..123325357,+ | |||
|description=CAGE_peak_1_at_ENST00000525757_5end,CAGE_peak_1_at_uc001pyv.1_5end | |description=CAGE_peak_1_at_ENST00000525757_5end,CAGE_peak_1_at_uc001pyv.1_5end | ||
|id=chr11:123325343..123325357,+ | |id=chr11:123325343..123325357,+ | ||
|ontology_enrichment_celltype=CL:0000860!1.11e-11!45;CL:0002057!2.75e-09!42;CL:0002009!1.67e-07!65;CL:0002539!2.96e-07!10;CL:0002194!3.24e-07!63;CL:0000576!3.24e-07!63;CL:0000040!3.24e-07!63;CL:0000559!3.24e-07!63;CL:0000557!7.44e-07!71 | |ontology_enrichment_celltype=CL:0000860!1.11e-11!45;CL:0002057!2.75e-09!42;CL:0002009!1.67e-07!65;CL:0002539!2.96e-07!10;CL:0002194!3.24e-07!63;CL:0000576!3.24e-07!63;CL:0000040!3.24e-07!63;CL:0000559!3.24e-07!63;CL:0000557!7.44e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.58e-11;33!CL:0002057;1.58e-11;33!CL:0002539;3.86e-11;10!CL:0000473;1.20e-07;39!CL:0000234;1.20e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,3.72e-11,10;CL:0000860,1.22e-08,42;CL:0002057,1.22e-08,42;CL:0000473,3.88e-07,48;CL:0000234,3.88e-07,48 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.40e-10;29!CL:0002057;7.82e-07;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.31e-08,106;DOID:0050687,5.88e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.71e-12!9;UBERON:0000926!8.61e-11!448;UBERON:0004120!8.61e-11!448;UBERON:0006603!8.61e-11!448;UBERON:0003081!1.20e-08!216;UBERON:0004573!7.74e-08!33;UBERON:0004571!7.74e-08!33;UBERON:0002075!1.50e-07!18;UBERON:0004872!2.22e-07!84;UBERON:0001557!2.65e-07!19;UBERON:0004237!2.96e-07!10;UBERON:0004695!2.96e-07!10;UBERON:0002111!2.96e-07!10;UBERON:0004178!2.96e-07!10;UBERON:0002204!4.83e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.13e-23;9!UBERON:0001557;4.13e-23;9!UBERON:0004237;3.86e-11;10!UBERON:0004695;3.86e-11;10!UBERON:0002111;3.86e-11;10!UBERON:0004178;3.86e-11;10!UBERON:0000072;2.12e-07;37!UBERON:0001135;4.88e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.94e-23,9;UBERON:0001557,7.90e-12,19;UBERON:0004237,3.72e-11,10;UBERON:0004695,3.72e-11,10;UBERON:0002111,3.72e-11,10;UBERON:0004178,3.72e-11,10;UBERON:0008947,2.21e-07,38;UBERON:0003258,2.21e-07,38;UBERON:0001135,4.76e-07,15;UBERON:0003081,6.20e-07,203 | |||
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| ||
|short_description=p1@ENST00000525757,p1@uc001pyv.1 | |short_description=p1@ENST00000525757,p1@uc001pyv.1 | ||
}} | }} |
Latest revision as of 19:24, 23 July 2015
Short description: | p1@ENST00000525757, p1@uc001pyv.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000525757_5end, CAGE_peak_1_at_uc001pyv.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 237bp_to_ENST00000525757, uc001pyv.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 3.72e-11 | 10 |
classical monocyte | 1.22e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.22e-08 | 42 |
defensive cell | 3.88e-07 | 48 |
phagocyte | 3.88e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.94e-23 | 9 |
upper respiratory tract | 7.90e-12 | 19 |
blood vessel smooth muscle | 3.72e-11 | 10 |
arterial system smooth muscle | 3.72e-11 | 10 |
artery smooth muscle tissue | 3.72e-11 | 10 |
aorta smooth muscle tissue | 3.72e-11 | 10 |
respiratory primordium | 2.21e-07 | 38 |
endoderm of foregut | 2.21e-07 | 38 |
smooth muscle tissue | 4.76e-07 | 15 |
lateral plate mesoderm | 6.20e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.31e-08 | 106 |
cell type cancer | 5.88e-07 | 143 |