Data source: Difference between revisions
From FANTOM5_SSTAR
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=== Coexpression module === | === Coexpression module === | ||
* FFCP member list | * FFCP member list | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/SYNC015_combined_clustertables.txt Human] | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mouse_filtered2_p75_m22_T.clusters.txt Mouse] | ||
* Sample ontology enrichment analysis | * Sample ontology enrichment analysis | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ human] | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ mouse] | ||
* GOStat results on Coexpression module | * GOStat results on Coexpression module | ||
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human] | ** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human] | ||
Revision as of 16:51, 12 February 2015
Data sources used in FANTOM5 SSTAR
CAGE peaks
- CAGE peak location (with the robust threshold) , annotation, and expression
- Ontology-based sample term enrichment analysis
Genes
- Gene details (obtained from EntrezGene)
Coexpression module
- FFCP member list
- Sample ontology enrichment analysis
- GOStat results on Coexpression module
- Pathway enrichment analysis
- TFBS overrepresentation
- ENCODE_TF_ChIP-seq_peak enrichment analysis
- Relative expression of the co-expression module
Motifs
- Novel motifs GREAT analysis results
- Novel motifs Significance of the correlation with CAGE expression
- Jaspar motifs Significance of the correlation with CAGE expression
Sample
- sample name and attributes
- Transcription factors, relative expression
- HOMER motifs
- Repeat family, relative expression
