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{{UBERON
{{UBERON
|id=UBERON:0010225
|alt_id=
|name=thalamic complex
|namespace=
|def=
|xref=EHDAA2:0004469;;FMA:258745
|is_a=UBERON:0002784
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010225
|is_a=UBERON:0002784
|is_obsolete=
|located_in=
|located_in=
|name=thalamic complex
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0004469;;FMA:258745
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:thalamic complex
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0004469

FMA:258745

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001894(diencephalon)



Children

part of:UBERON:0001897 (dorsal plus ventral thalamus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010225 (thalamic complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.61e-131FFCP PHASE2:Hg19::chr2:198530770..198530773,-#_cf55b3240da37e2f896cffc42f01aaafp@chr2:198530770..198530773, -
4.61e-131FFCP PHASE1:Hg19::chr2:198530770..198530773,-#_cf55b3240da37e2f896cffc42f01aaafp@chr2:198530770..198530773, -
1.55e-98FFCP PHASE1:Hg19::chrX:140890284..140890288,+#_4878ced70dd470115f7e85997496be19p@chrX:140890284..140890288, +
1.55e-98FFCP PHASE2:Hg19::chrX:140890284..140890288,+#_4878ced70dd470115f7e85997496be19p@chrX:140890284..140890288, +
1.05e-79FFCP PHASE1:Hg19::chr9:108129231..108129235,+#_f49c8f3a899f6eac2a2450ea857d4a0bp@chr9:108129231..108129235, +
1.05e-79FFCP PHASE2:Hg19::chr9:108129231..108129235,+#_f49c8f3a899f6eac2a2450ea857d4a0bp@chr9:108129231..108129235, +
1.45e-66FFCP PHASE1:Hg19::chr10:681520..681525,-#_ae4a4435db5cdc39487b5645377e5892p@chr10:681520..681525, -
1.45e-66FFCP PHASE2:Hg19::chr10:681520..681525,-#_ae4a4435db5cdc39487b5645377e5892p@chr10:681520..681525, -
5.53e-66FFCP PHASE1:Hg19::chr2:201599836..201599844,-#_0162eae9f8f4762c588d17402f53c7edp3@LOC100507140
5.53e-66FFCP PHASE2:Hg19::chr2:201599836..201599844,-#_0162eae9f8f4762c588d17402f53c7edp3@LOC100507140
1.13e-57FFCP PHASE2:Hg19::chr17:70890496..70890500,-#_d59fe0f51088d2fb115ad006c7c15af8p@chr17:70890496..70890500, -
1.13e-57FFCP PHASE1:Hg19::chr17:70890496..70890500,-#_d59fe0f51088d2fb115ad006c7c15af8p@chr17:70890496..70890500, -
1.51e-57FFCP PHASE2:Hg19::chr17:36605118..36605121,+#_d525d980dc96b2d969002cddb17c5ed1p@chr17:36605118..36605121, +
1.51e-57FFCP PHASE1:Hg19::chr17:36605118..36605121,+#_d525d980dc96b2d969002cddb17c5ed1p@chr17:36605118..36605121, +
4.77e-57FFCP PHASE1:Hg19::chr6:97520453..97520454,+#_10147ab63129111ad6dcadcf3f5918cap@chr6:97520453..97520454, +
4.77e-57FFCP PHASE2:Hg19::chr6:97520453..97520454,+#_10147ab63129111ad6dcadcf3f5918cap@chr6:97520453..97520454, +
6.36e-57FFCP PHASE1:Hg19::chr21:41300975..41300984,+#_2565dbb1f1b42d1553c6e2def465df3ap@chr21:41300975..41300984, +
6.36e-57FFCP PHASE2:Hg19::chr3:133487652..133487656,+#_2565dbb1f1b42d1553c6e2def465df3ap@chr3:133487652..133487656, +
6.36e-57FFCP PHASE2:Hg19::chr21:41300975..41300984,+#_2565dbb1f1b42d1553c6e2def465df3ap@chr21:41300975..41300984, +
6.36e-57FFCP PHASE1:Hg19::chr3:133487652..133487656,+#_2565dbb1f1b42d1553c6e2def465df3ap@chr3:133487652..133487656, +
8.82e-51FFCP PHASE2:Hg19::chr17:73865552..73865562,+#_58813cc0f5b2824a88e646989f6550d9p@chr17:73865552..73865562, +
8.82e-51FFCP PHASE1:Hg19::chr17:73865552..73865562,+#_58813cc0f5b2824a88e646989f6550d9p@chr17:73865552..73865562, +
8.82e-51FFCP PHASE2:Hg19::chr1:201476057..201476070,+#_58813cc0f5b2824a88e646989f6550d9p4@ENST00000454651
8.82e-51FFCP PHASE1:Hg19::chr1:201476057..201476070,+#_58813cc0f5b2824a88e646989f6550d9p4@ENST00000454651
1.88e-50FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_311afefdf0a7a9ac8b3b50d142ed6eeap8@R3HCC1
1.88e-50FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_311afefdf0a7a9ac8b3b50d142ed6eeap8@R3HCC1
1.88e-50FFCP PHASE2:Hg19::chr6:134605007..134605011,-#_311afefdf0a7a9ac8b3b50d142ed6eeap@chr6:134605007..134605011, -
1.88e-50FFCP PHASE1:Hg19::chr6:134605007..134605011,-#_311afefdf0a7a9ac8b3b50d142ed6eeap@chr6:134605007..134605011, -
2.74e-50FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_0c2bf389eef0e993e21211e13fc48fa6p@chr19:35788742..35788752, +
2.74e-50FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_0c2bf389eef0e993e21211e13fc48fa6p@chr19:35788742..35788752, +
2.74e-50FFCP PHASE2:Hg19::chr10:114886533..114886542,+#_0c2bf389eef0e993e21211e13fc48fa6p48@TCF7L2
2.74e-50FFCP PHASE1:Hg19::chr10:114886533..114886542,+#_0c2bf389eef0e993e21211e13fc48fa6p48@TCF7L2
4.0e-50FFCP PHASE1:Hg19::chr14:36367182..36367189,+#_a6cd8fda9867fc5ca3169ca277ddade2p5@ENST00000550089
4.0e-50FFCP PHASE2:Hg19::chr14:36367182..36367189,+#_a6cd8fda9867fc5ca3169ca277ddade2p5@ENST00000550089
4.52e-50FFCP PHASE2:Hg19::chr3:155011771..155011808,-#_39ac3892d27b860d709f46f8ca562ceap1@ENST00000489090
4.52e-50FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_39ac3892d27b860d709f46f8ca562ceap@chr4:56229918..56229919, -
4.52e-50FFCP PHASE2:Hg19::chrX:134232704..134232705,-#_39ac3892d27b860d709f46f8ca562ceap4@LINC00087
4.52e-50FFCP PHASE2:Hg19::chr6:143858194..143858197,+#_39ac3892d27b860d709f46f8ca562ceap@chr6:143858194..143858197, +
4.52e-50FFCP PHASE1:Hg19::chr11:123502025..123502039,-#_39ac3892d27b860d709f46f8ca562ceap22@SCN3B
4.52e-50FFCP PHASE1:Hg19::chr6:143858194..143858197,+#_39ac3892d27b860d709f46f8ca562ceap@chr6:143858194..143858197, +
4.52e-50FFCP PHASE2:Hg19::chr11:123502025..123502039,-#_39ac3892d27b860d709f46f8ca562ceap22@SCN3B
4.52e-50FFCP PHASE2:Hg19::chrX:1481635..1481645,-#_39ac3892d27b860d709f46f8ca562ceap@chrX:1481635..1481645, -
4.52e-50FFCP PHASE1:Hg19::chrX:134232704..134232705,-#_39ac3892d27b860d709f46f8ca562ceap4@LINC00087
4.52e-50FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_39ac3892d27b860d709f46f8ca562ceap@chr4:56229918..56229919, -
4.52e-50FFCP PHASE1:Hg19::chr3:155011771..155011808,-#_39ac3892d27b860d709f46f8ca562ceap1@ENST00000489090
4.52e-50FFCP PHASE2:Hg19::chr7:107883711..107883718,-#_39ac3892d27b860d709f46f8ca562ceap29@NRCAM
4.52e-50FFCP PHASE1:Hg19::chrX:1481635..1481645,-#_39ac3892d27b860d709f46f8ca562ceap@chrX:1481635..1481645, -
4.52e-50FFCP PHASE1:Hg19::chr7:107883711..107883718,-#_39ac3892d27b860d709f46f8ca562ceap29@NRCAM
8.5e-50FFCP PHASE2:Hg19::chr5:132111925..132111938,+#_2eb0b586eb1e09bae5e8b1e7771117fcp@chr5:132111925..132111938, +
8.5e-50FFCP PHASE1:Hg19::chr5:132111925..132111938,+#_2eb0b586eb1e09bae5e8b1e7771117fcp@chr5:132111925..132111938, +
1.09e-49FFCP PHASE1:Hg19::chr4:159175135..159175146,+#_86594e40210c4c5d60cc5ab8c11105f3p@chr4:159175135..159175146, +
1.09e-49FFCP PHASE2:Hg19::chr18:74692038..74692048,+#_86594e40210c4c5d60cc5ab8c11105f3p@chr18:74692038..74692048, +
1.09e-49FFCP PHASE1:Hg19::chr18:74692038..74692048,+#_86594e40210c4c5d60cc5ab8c11105f3p@chr18:74692038..74692048, +
1.09e-49FFCP PHASE2:Hg19::chr4:159175135..159175146,+#_86594e40210c4c5d60cc5ab8c11105f3p@chr4:159175135..159175146, +
2.55e-45FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_9c8b1b9d76a699438ae48b37ba84540ap4@ENST00000458087, p4@uc003tew.1
2.55e-45FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_9c8b1b9d76a699438ae48b37ba84540ap4@ENST00000458087, p4@uc003tew.1
4.0e-45FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_d7bbba66c8246dad0fd90c7b5913dd01p8@SEMA3B
4.0e-45FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_d7bbba66c8246dad0fd90c7b5913dd01p8@SEMA3B
5.0e-45FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_6cb04ad684f919be741ef6f039023637p@chr3:42687264..42687266, -
5.0e-45FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_6cb04ad684f919be741ef6f039023637p@chr3:42687264..42687266, -
6.26e-45FFCP PHASE2:Hg19::chr7:30198187..30198200,+#_b8e0485dbd7e2ce3815cc896f43b4228p@chr7:30198187..30198200, +
6.26e-45FFCP PHASE1:Hg19::chr7:30198187..30198200,+#_b8e0485dbd7e2ce3815cc896f43b4228p@chr7:30198187..30198200, +
7.83e-45FFCP PHASE2:Hg19::chr2:74667046..74667051,-#_cb6ab8820698a1fb688c60b722155fefp20@RTKN
7.83e-45FFCP PHASE2:Hg19::chr12:26191828..26191840,+#_cb6ab8820698a1fb688c60b722155fefp@chr12:26191828..26191840, +
7.83e-45FFCP PHASE1:Hg19::chr12:26191828..26191840,+#_cb6ab8820698a1fb688c60b722155fefp@chr12:26191828..26191840, +
7.83e-45FFCP PHASE1:Hg19::chr2:74667046..74667051,-#_cb6ab8820698a1fb688c60b722155fefp20@RTKN
9.79e-45FFCP PHASE2:Hg19::chr4:95972775..95972786,+#_3d946e4893a223642c4fce17508366dep16@BMPR1B
9.79e-45FFCP PHASE1:Hg19::chr4:95972775..95972786,+#_3d946e4893a223642c4fce17508366dep16@BMPR1B
1.22e-44FFCP PHASE2:Hg19::chr4:167759804..167759851,-#_913702875f12050c58ca53befbd5eb0bp@chr4:167759804..167759851, -
1.22e-44FFCP PHASE1:Hg19::chr4:167759804..167759851,-#_913702875f12050c58ca53befbd5eb0bp@chr4:167759804..167759851, -
1.53e-44FFCP PHASE1:Hg19::chr4:158493753..158493770,+#_4ead611c2418cbc8b28e29b1384f852fp1@ENST00000455598
1.53e-44FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_4ead611c2418cbc8b28e29b1384f852fp4@ENST00000515519
1.53e-44FFCP PHASE2:Hg19::chr4:158493753..158493770,+#_4ead611c2418cbc8b28e29b1384f852fp1@ENST00000455598
1.53e-44FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_4ead611c2418cbc8b28e29b1384f852fp4@ENST00000515519
2.98e-44FFCP PHASE2:Hg19::chrX:103046902..103046909,+#_cd60a07f8c8bab42bf6d94f4e37240fdp@chrX:103046902..103046909, +
2.98e-44FFCP PHASE1:Hg19::chrX:103046902..103046909,+#_cd60a07f8c8bab42bf6d94f4e37240fdp@chrX:103046902..103046909, +
3.99e-41FFCP PHASE2:Hg19::chr2:58134822..58134832,+#_6bebca4e653c32ec9697a3ad8a37e5a8p9@VRK2
3.99e-41FFCP PHASE1:Hg19::chr2:58134822..58134832,+#_6bebca4e653c32ec9697a3ad8a37e5a8p9@VRK2
4.89e-41FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_c77b13f39d0eea726269e0d9bddd696bp4@TTLL7
4.89e-41FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_c77b13f39d0eea726269e0d9bddd696bp4@TTLL7
5.99e-41FFCP PHASE2:Hg19::chr10:64133988..64133999,-#_7d89b80421a193bcff2e322fbe8d9906p@chr10:64133988..64133999, -
5.99e-41FFCP PHASE1:Hg19::chr10:64133988..64133999,-#_7d89b80421a193bcff2e322fbe8d9906p@chr10:64133988..64133999, -
7.33e-41FFCP PHASE2:Hg19::chr16:83741439..83741440,-#_6dc6343e43002eb6daf02bd64810ac5fp@chr16:83741439..83741440, -
7.33e-41FFCP PHASE1:Hg19::chr16:83741439..83741440,-#_6dc6343e43002eb6daf02bd64810ac5fp@chr16:83741439..83741440, -
1.1e-40FFCP PHASE2:Hg19::chr16:19612967..19612983,+#_286a18bd250f6fa1eeb871d5e1122c5bp7@C16orf62
1.1e-40FFCP PHASE1:Hg19::chr16:19612967..19612983,+#_286a18bd250f6fa1eeb871d5e1122c5bp7@C16orf62
1.1e-40FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_286a18bd250f6fa1eeb871d5e1122c5bp@chr11:119846813..119846826, +
1.1e-40FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_286a18bd250f6fa1eeb871d5e1122c5bp@chr11:119846813..119846826, +
2.01e-40FFCP PHASE2:Hg19::chr21:22175450..22175461,-#_658e68dab2da3b0dfecac71d15e9d051p2@LINC00320
2.01e-40FFCP PHASE2:Hg19::chr19:35783038..35783039,+#_658e68dab2da3b0dfecac71d15e9d051p4@MAG
2.01e-40FFCP PHASE1:Hg19::chr19:35783038..35783039,+#_658e68dab2da3b0dfecac71d15e9d051p4@MAG
2.01e-40FFCP PHASE1:Hg19::chr21:22175450..22175461,-#_658e68dab2da3b0dfecac71d15e9d051p2@LINC00320
3.01e-40FFCP PHASE2:Hg19::chr11:113078055..113078071,+#_b3b4d83e9cf0a9c5f914e95b3813290ap@chr11:113078055..113078071, +
3.01e-40FFCP PHASE1:Hg19::chr11:113078055..113078071,+#_b3b4d83e9cf0a9c5f914e95b3813290ap@chr11:113078055..113078071, +
5.49e-40FFCP PHASE2:Hg19::chr11:47616800..47616812,-#_5ea7c74f87003427e0ebf137ddbe1a15p@chr11:47616800..47616812, -
5.49e-40FFCP PHASE1:Hg19::chr11:47616800..47616812,-#_5ea7c74f87003427e0ebf137ddbe1a15p@chr11:47616800..47616812, -
3.28e-37FFCP PHASE2:Hg19::chr1:204839880..204839889,+#_e1bfdb38f50a10aaf4431d78719777acp7@NFASC
3.28e-37FFCP PHASE1:Hg19::chr1:204839880..204839889,+#_e1bfdb38f50a10aaf4431d78719777acp7@NFASC
4.73e-37FFCP PHASE2:Hg19::chr3:58551936..58551947,+#_690fcde85e572b1f9e1ae29ef7bd3156p@chr3:58551936..58551947, +
4.73e-37FFCP PHASE2:Hg19::chr21:18885024..18885035,+#_690fcde85e572b1f9e1ae29ef7bd3156p4@CXADR

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