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{{UBERON
{{UBERON
|id=UBERON:0010141
|alt_id=
|name=primitive sex cord of indifferent gonad
|namespace=
|def=
|xref=EHDAA2:0004051
|is_a=UBERON:0004909;;UBERON:0005295
|synonym="indifferent sex cord" EXACT [];;"primitive sex cords" EXACT [EHDAA2:0004051]
|comment=Usage notes: note that this represents the indifferent structure.
|comment=Usage notes: note that this represents the indifferent structure.
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0005891
|develops_from=UBERON:0005891
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010141
|is_a=UBERON:0004909 ;;UBERON:0005295
|is_obsolete=
|located_in=
|located_in=
|name=primitive sex cord of indifferent gonad
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0009117
|part_of=UBERON:0009117
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="indifferent sex cord" EXACT [];;"primitive sex cords" EXACT [EHDAA2:0004051]
|union_of=
|xref=EHDAA2:0004051
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:primitive sex cord of indifferent gonad
Namespace:FANTOM
Xrefs:
links:
EHDAA2:0004051
Synonyms: "indifferent sex cord" EXACT []
"primitive sex cords" EXACT [EHDAA2:0004051]
Comments:Usage notes: note that this represents the indifferent structure.

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004909(epithelium of gonad),UBERON:0005295(sex cord)
develops_from:UBERON:0005891(coelomic epithelium)
part_of:UBERON:0009117(indifferent gonad)



Children

develops from:UBERON:0005297 (testis sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010141 (primitive sex cord of indifferent gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_283eb6855ed5e9080e90b7550d06b5cap26@BDNF
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_283eb6855ed5e9080e90b7550d06b5cap26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_30119a7264f7d355131ff16c67de5d57p43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_30119a7264f7d355131ff16c67de5d57p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_30119a7264f7d355131ff16c67de5d57p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_30119a7264f7d355131ff16c67de5d57p43@CDC42BPA
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_aaf94f3f7d0791edbbe58c4995993438p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_aaf94f3f7d0791edbbe58c4995993438p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_aaf94f3f7d0791edbbe58c4995993438p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_aaf94f3f7d0791edbbe58c4995993438p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_aaf94f3f7d0791edbbe58c4995993438p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_aaf94f3f7d0791edbbe58c4995993438p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_aaf94f3f7d0791edbbe58c4995993438p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_aaf94f3f7d0791edbbe58c4995993438p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_aaf94f3f7d0791edbbe58c4995993438p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_aaf94f3f7d0791edbbe58c4995993438p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_aaf94f3f7d0791edbbe58c4995993438p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_aaf94f3f7d0791edbbe58c4995993438p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_aaf94f3f7d0791edbbe58c4995993438p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_aaf94f3f7d0791edbbe58c4995993438p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_aaf94f3f7d0791edbbe58c4995993438p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_aaf94f3f7d0791edbbe58c4995993438p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_aaf94f3f7d0791edbbe58c4995993438p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_aaf94f3f7d0791edbbe58c4995993438p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_aaf94f3f7d0791edbbe58c4995993438p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_aaf94f3f7d0791edbbe58c4995993438p7@C7orf63
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_4553cf47a3189b185bffff020be966f8p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_4553cf47a3189b185bffff020be966f8p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_0ff009f6ed56d99565a9642654d3f380p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_0ff009f6ed56d99565a9642654d3f380p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_0ff009f6ed56d99565a9642654d3f380p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_0ff009f6ed56d99565a9642654d3f380p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_0ff009f6ed56d99565a9642654d3f380p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_0ff009f6ed56d99565a9642654d3f380p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_0ff009f6ed56d99565a9642654d3f380p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_0ff009f6ed56d99565a9642654d3f380p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_0ff009f6ed56d99565a9642654d3f380p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_0ff009f6ed56d99565a9642654d3f380p21@EPS8
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_1b8a2a080e6fa8639195c05af21bc65cp@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_1b8a2a080e6fa8639195c05af21bc65cp4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_1b8a2a080e6fa8639195c05af21bc65cp38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_1b8a2a080e6fa8639195c05af21bc65cp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_1b8a2a080e6fa8639195c05af21bc65cp@chr3:170916991..170916995, -
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_1b8a2a080e6fa8639195c05af21bc65cp4@GTPBP4
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_1b8a2a080e6fa8639195c05af21bc65cp38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_1b8a2a080e6fa8639195c05af21bc65cp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_1b8a2a080e6fa8639195c05af21bc65cp@chr5:90830481..90830492, +
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_98a6ec3f3474c101c09d0927282a9a41p4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_98a6ec3f3474c101c09d0927282a9a41p4@Spink12
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_557c9a82938ea7d7ff104a86388f9377p8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_557c9a82938ea7d7ff104a86388f9377p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_557c9a82938ea7d7ff104a86388f9377p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_557c9a82938ea7d7ff104a86388f9377p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_557c9a82938ea7d7ff104a86388f9377p8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_557c9a82938ea7d7ff104a86388f9377p@chr11:114173606..114173612, +
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_d4615bd5332118a11f433282467d7e62p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_d4615bd5332118a11f433282467d7e62p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_d4615bd5332118a11f433282467d7e62p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_d4615bd5332118a11f433282467d7e62p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_d4615bd5332118a11f433282467d7e62p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_d4615bd5332118a11f433282467d7e62p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_d4615bd5332118a11f433282467d7e62p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_d4615bd5332118a11f433282467d7e62p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_d4615bd5332118a11f433282467d7e62p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_d4615bd5332118a11f433282467d7e62p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_d4615bd5332118a11f433282467d7e62p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_d4615bd5332118a11f433282467d7e62p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_d4615bd5332118a11f433282467d7e62p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_d4615bd5332118a11f433282467d7e62p11@USP25
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_a3a6245877b7befd3da37aff60a637c7p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_a3a6245877b7befd3da37aff60a637c7p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_a3a6245877b7befd3da37aff60a637c7p11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_a3a6245877b7befd3da37aff60a637c7p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_a3a6245877b7befd3da37aff60a637c7p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_a3a6245877b7befd3da37aff60a637c7p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_a3a6245877b7befd3da37aff60a637c7p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_a3a6245877b7befd3da37aff60a637c7p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_a3a6245877b7befd3da37aff60a637c7p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_a3a6245877b7befd3da37aff60a637c7p11@EFCAB4A
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_18c24db6f8fd9cd5dad18c81213f3928p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_18c24db6f8fd9cd5dad18c81213f3928p1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_18c24db6f8fd9cd5dad18c81213f3928p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_18c24db6f8fd9cd5dad18c81213f3928p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_18c24db6f8fd9cd5dad18c81213f3928p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_18c24db6f8fd9cd5dad18c81213f3928p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_18c24db6f8fd9cd5dad18c81213f3928p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_18c24db6f8fd9cd5dad18c81213f3928p13@SOS2
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_5f69b03313b5e6b07a7b7ee5c116484bp@chr17:75581992..75582009, +
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_5f69b03313b5e6b07a7b7ee5c116484bp@chr17:75581992..75582009, +
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_59abc53eff94e78319f27b8ea0950c3fp@chr3:194214959..194214968, -
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_59abc53eff94e78319f27b8ea0950c3fp@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr2:102604493..102604499,+#_2e52c40546d0efd52c3850d0df7bdbabp@chr2:102604493..102604499, +
9.91e-41FFCP PHASE1:Hg19::chr8:125193673..125193689,-#_2e52c40546d0efd52c3850d0df7bdbabp@chr8:125193673..125193689, -
9.91e-41FFCP PHASE1:Hg19::chr3:49139102..49139119,-#_2e52c40546d0efd52c3850d0df7bdbabp@chr3:49139102..49139119, -
9.91e-41FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_2e52c40546d0efd52c3850d0df7bdbabp@chr11:77282391..77282402, +

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