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{{UBERON
{{UBERON
|id=UBERON:0009142
|alt_id=UBERON:0003313
|name=entire mesenchyme
|namespace=
|def=
|xref=EHDAA:177;;EHDAA2:0001113;;EMAPA:16097
|is_a=UBERON:0000481;;UBERON:0004120
|synonym=
|comment=consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
|comment=consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
|alt_id=UBERON:0003313
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009142
|is_a=UBERON:0000477 ;;UBERON:0002050 ;;UBERON:0017650
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=entire embryonic mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=EHDAA2:0001113;;EHDAA:177;;EMAPA:16097
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:entire embryonic mesenchyme
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0001113
EHDAA:177

EMAPA:16097
Comments:consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
Alt_id: UBERON:0003313

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0017650(developing mesenchymal structure)
part_of:UBERON:0000922(embryo)



Children

part of:UBERON:0003104 (mesenchyme),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009142 (entire embryonic mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.46e-31FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_a272d628cac5eb1c9deecc0af32a7c19p4@Fggy
6.46e-31FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_a272d628cac5eb1c9deecc0af32a7c19p4@Fggy
1.91e-30FFCP PHASE2:Hg19::chr8:30242040..30242045,+#_82c19d40da440757f155ff24ab74271ap2@RBPMS
1.91e-30FFCP PHASE1:Hg19::chr8:30242040..30242045,+#_82c19d40da440757f155ff24ab74271ap2@RBPMS
2.99e-28FFCP PHASE1:Hg19::chr8:30242048..30242064,+#_33d44e245af34cf24dccb6098590aac3p1@RBPMS
2.99e-28FFCP PHASE2:Hg19::chr8:30242048..30242064,+#_33d44e245af34cf24dccb6098590aac3p1@RBPMS
5.64e-28FFCP PHASE1:Hg19::chr8:30241934..30241945,+#_af41d1b4d3c0ef195f1519b00c810625p3@RBPMS
5.64e-28FFCP PHASE2:Hg19::chr8:30241934..30241945,+#_af41d1b4d3c0ef195f1519b00c810625p3@RBPMS
6.23e-28FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_c76487285a62e84e793988dc7e72b8c1p2@ENSMUST00000145644
6.23e-28FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_c76487285a62e84e793988dc7e72b8c1p2@ENSMUST00000145644
6.8e-28FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_09e37d0c97fef369c985813b8bf34c6cp3@Pde4c
6.8e-28FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_09e37d0c97fef369c985813b8bf34c6cp3@Pde4c
2.88e-27FFCP PHASE1:Hg19::chr11:114167164..114167190,+#_7cf7d3c37d56ae5fa428a3c3562f2414p2@NNMT
2.88e-27FFCP PHASE2:Hg19::chr11:114167164..114167190,+#_7cf7d3c37d56ae5fa428a3c3562f2414p2@NNMT
3.05e-27FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_6a299e3f35ff6d1895e8a583214eae51p4@Ttc36
3.05e-27FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_6a299e3f35ff6d1895e8a583214eae51p4@Ttc36
5.08e-27FFCP PHASE1:Hg19::chr19:48894762..48894830,-#_06f039ce127f92056778fe087d0863d7p1@KDELR1
5.08e-27FFCP PHASE2:Hg19::chr19:48894762..48894830,-#_06f039ce127f92056778fe087d0863d7p1@KDELR1
1.09e-26FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_7d7ad48ee8109664b5a526e5bcc13303p@chr11:60622345..60622377, -
1.09e-26FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_7d7ad48ee8109664b5a526e5bcc13303p@chr11:60622345..60622377, -
1.25e-26FFCP PHASE1:Mm9::chr10:88996274..88996286,-#_79a49eaeebdbada323a1a80d2dcb7859p4@Nr1h4
1.25e-26FFCP PHASE2:Mm9::chr10:88996274..88996286,-#_79a49eaeebdbada323a1a80d2dcb7859p4@Nr1h4
1.81e-26FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_c65d5d1134f54b2af3030f1d242deda6p2@Igfbp1
1.81e-26FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_c65d5d1134f54b2af3030f1d242deda6p2@Igfbp1
2.8e-26FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_e7c903a2a361e51c9e28e9be591e56efp1@Glyat
2.8e-26FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_e7c903a2a361e51c9e28e9be591e56efp1@Glyat
3.19e-26FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_e0b0683fe567fcc2d783c520b4ac48dap2@Slc17a3
3.19e-26FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_e0b0683fe567fcc2d783c520b4ac48dap2@Slc17a3
3.4e-26FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_98f5821c0fa204c9459f841522498155p@chr16:37621995..37622022, -
3.4e-26FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_98f5821c0fa204c9459f841522498155p@chr16:37621995..37622022, -
4.15e-26FFCP PHASE2:Hg19::chr11:114167202..114167221,+#_a03cc347588a09b8701a38cc86206034p3@NNMT
4.15e-26FFCP PHASE1:Hg19::chr11:114167202..114167221,+#_a03cc347588a09b8701a38cc86206034p3@NNMT
6.21e-26FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_335ec60d57168209b78a4413a0b8e3a9p3@Slc17a3
6.21e-26FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_335ec60d57168209b78a4413a0b8e3a9p3@Slc17a3
7.91e-26FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_aa0cba696cfe3965f7b4ff05ccd074e9p2@Cyp2j5
7.91e-26FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_aa0cba696cfe3965f7b4ff05ccd074e9p2@Cyp2j5
1.05e-25FFCP PHASE2:Mm9::chr1:142079981..142079992,-#_05037b3f84e3e31610902e185cc7a028p3@Cfh
1.05e-25FFCP PHASE1:Mm9::chr1:142079981..142079992,-#_05037b3f84e3e31610902e185cc7a028p3@Cfh
1.26e-25FFCP PHASE1:Hg19::chr7:6523755..6523829,-#_15ba79da16b8960cc88795a38af91f73p1@DAGLB, p1@KDELR2
1.26e-25FFCP PHASE2:Hg19::chr7:6523755..6523829,-#_15ba79da16b8960cc88795a38af91f73p1@DAGLB, p1@KDELR2
1.32e-25FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_82c24b93a713a6d1627703ade0fdf190p4@Hgd
1.32e-25FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_82c24b93a713a6d1627703ade0fdf190p4@Hgd
1.63e-25FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_4e27775e0f690722b6809e981a35ac9fp3@F13b
1.63e-25FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_4e27775e0f690722b6809e981a35ac9fp3@F13b
1.79e-25FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_f7ca0fc162bd59486b2ad1e94fc6e8ccp3@Fggy
1.79e-25FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_f7ca0fc162bd59486b2ad1e94fc6e8ccp3@Fggy
2.13e-25FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_707d7b26178f909bb5a8b99d3b451f49p5@Cyp2d26
2.13e-25FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_707d7b26178f909bb5a8b99d3b451f49p5@Cyp2d26
2.19e-25FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_b35f12de008c8886916e19276eac26d2p@chr10:95305558..95305580, -
2.19e-25FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_b35f12de008c8886916e19276eac26d2p@chr10:95305558..95305580, -
2.31e-25FFCP PHASE1:Hg19::chr14:35183837..35183867,-#_64ce5fa46c8a41445e58070779d89bd4p2@CFL2
2.31e-25FFCP PHASE2:Hg19::chr14:35183837..35183867,-#_64ce5fa46c8a41445e58070779d89bd4p2@CFL2
2.74e-25FFCP PHASE2:Hg19::chr5:148521286..148521377,+#_3d390b15a6ba31f043fa41fef3f6f45cp2@ABLIM3
2.74e-25FFCP PHASE1:Hg19::chr5:148521286..148521377,+#_3d390b15a6ba31f043fa41fef3f6f45cp2@ABLIM3
2.77e-25FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_e18d02cc11c0c5ce68109de4f1199e80p@chr9:44609886..44609901, -
2.77e-25FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_e18d02cc11c0c5ce68109de4f1199e80p@chr9:44609886..44609901, -
4.16e-25FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_ab64b79cfca131eba07b64aa3dd7747ap5@Park7
4.16e-25FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_ab64b79cfca131eba07b64aa3dd7747ap5@Park7
4.54e-25FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_00a226faa7a32e165b5db035ec032139p4@Slc25a21
4.54e-25FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_00a226faa7a32e165b5db035ec032139p4@Slc25a21
4.55e-25FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_df6271956634c30a31c9f147069cf57ep@chr9:44609861..44609874, -
4.55e-25FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_df6271956634c30a31c9f147069cf57ep@chr9:44609861..44609874, -
4.85e-25FFCP PHASE1:Mm9::chr4:140176541..140176565,-#_60ccabdc61278ea2a5e0ebcb7af8d6ffp@chr4:140176541..140176565, -
4.85e-25FFCP PHASE2:Mm9::chr4:140176541..140176565,-#_60ccabdc61278ea2a5e0ebcb7af8d6ffp@chr4:140176541..140176565, -
5.05e-25FFCP PHASE1:Hg19::chr2:27255806..27255879,+#_5459dcb6a8f6e22af51bee7144b26a29p1@TMEM214
5.05e-25FFCP PHASE2:Hg19::chr2:27255806..27255879,+#_5459dcb6a8f6e22af51bee7144b26a29p1@TMEM214
5.09e-25FFCP PHASE1:Mm9::chr15:99733367..99733388,+#_c8cd9b25575e33e72114e2cc7687dc15p@chr15:99733367..99733388, +
5.09e-25FFCP PHASE2:Mm9::chr15:99733367..99733388,+#_c8cd9b25575e33e72114e2cc7687dc15p@chr15:99733367..99733388, +
8.37e-25FFCP PHASE1:Hg19::chr19:10946872..10946894,-#_e7e945643f65ccdfccc792d95e281c6ep1@TMED1
8.37e-25FFCP PHASE2:Hg19::chr19:10946872..10946894,-#_e7e945643f65ccdfccc792d95e281c6ep1@TMED1
8.8e-25FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_5f88f4e33bd475ae0673cef5de445b47p3@Hgd
8.8e-25FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_5f88f4e33bd475ae0673cef5de445b47p3@Hgd
1.03e-24FFCP PHASE1:Mm9::chr13:58224772..58224789,-#_ff184c32333358b3e9ae89cce872cbf7p@chr13:58224772..58224789, -
1.03e-24FFCP PHASE2:Mm9::chr13:58224772..58224789,-#_ff184c32333358b3e9ae89cce872cbf7p@chr13:58224772..58224789, -
1.13e-24FFCP PHASE1:Hg19::chr8:22446763..22446862,+#_bfb028628f414f97bdcefc1abd9a688ep1@PDLIM2
1.13e-24FFCP PHASE2:Hg19::chr8:22446763..22446862,+#_bfb028628f414f97bdcefc1abd9a688ep1@PDLIM2
1.21e-24FFCP PHASE1:Mm9::chr6:3938967..3938987,-#_4f7edff03a3f88a6f19f1dd0bfb9ef9ap@chr6:3938967..3938987, -
1.21e-24FFCP PHASE2:Mm9::chr6:3938967..3938987,-#_4f7edff03a3f88a6f19f1dd0bfb9ef9ap@chr6:3938967..3938987, -
1.24e-24FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_0cbc76bdb213741a65c2537cb4af3e40p1@Ugt3a2
1.24e-24FFCP PHASE1:Hg19::chr9:136242956..136242976,-#_f8ee005a18c614c8c0d0c688ef8e806dp2@SURF4
1.24e-24FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_0cbc76bdb213741a65c2537cb4af3e40p1@Ugt3a2
1.24e-24FFCP PHASE2:Hg19::chr9:136242956..136242976,-#_f8ee005a18c614c8c0d0c688ef8e806dp2@SURF4
1.56e-24FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_a420232e612954b5d98358077a146d38p@chr9:35685631..35685657, +
1.56e-24FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_a420232e612954b5d98358077a146d38p@chr9:35685631..35685657, +
1.68e-24FFCP PHASE1:Hg19::chr1:113249734..113249762,-#_906101ca7b551bed73d274d48c8c9291p1@RHOC
1.68e-24FFCP PHASE2:Hg19::chr1:113249734..113249762,-#_906101ca7b551bed73d274d48c8c9291p1@RHOC
1.9e-24FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_feeb957907dfcae22cbe3855fdddc1eep@chr9:35685273..35685313, +
1.9e-24FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_feeb957907dfcae22cbe3855fdddc1eep@chr9:35685273..35685313, +
2.03e-24FFCP PHASE1:Hg19::chr7:128470453..128470472,+#_5afe65cb6749cc64bbb1e0e00f22e4a1p1@FLNC
2.03e-24FFCP PHASE2:Hg19::chr7:128470453..128470472,+#_5afe65cb6749cc64bbb1e0e00f22e4a1p1@FLNC
2.16e-24FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_563ebe181d713812c4961b5f558f0114p5@Slc25a21
2.16e-24FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_563ebe181d713812c4961b5f558f0114p5@Slc25a21
2.39e-24FFCP PHASE2:Hg19::chr11:66056596..66056622,-#_cd9cd3934f2951ccfd4f67c3dc091050p1@YIF1A
2.39e-24FFCP PHASE1:Hg19::chr11:66056596..66056622,-#_cd9cd3934f2951ccfd4f67c3dc091050p1@YIF1A
2.46e-24FFCP PHASE2:Mm9::chr1:177562272..177562282,+#_da80a77862f2ecbe41a4bed300fb68c1p4@Kmo
2.46e-24FFCP PHASE1:Mm9::chr1:177562272..177562282,+#_da80a77862f2ecbe41a4bed300fb68c1p4@Kmo
3.12e-24FFCP PHASE2:Mm9::chr16:23029135..23029149,-#_2297649f324f70f40ba82723f3a8daf3p4@Kng2
3.12e-24FFCP PHASE1:Mm9::chr16:23029135..23029149,-#_2297649f324f70f40ba82723f3a8daf3p4@Kng2
3.55e-24FFCP PHASE1:Hg19::chr4:39529049..39529067,-#_56770210ea2e5de7a5a047550e72fe31p1@UGDH
3.55e-24FFCP PHASE2:Hg19::chr4:39529049..39529067,-#_56770210ea2e5de7a5a047550e72fe31p1@UGDH

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