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{{UBERON
{{UBERON
|id=UBERON:0009117
|alt_id=
|name=indifferent gonad
|namespace=
|def="A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981]
|xref=EHDAA2:0000716;;ncithesaurus:Indifferent_Gonad
|is_a=UBERON:0000991
|synonym=
|comment=typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321]
|comment=typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey
|subset=organ_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009117
|is_a=UBERON:0000991 ;;UBERON:0002050
|is_obsolete=
|located_in=
|located_in=
|name=indifferent gonad
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0009196
|part_of=UBERON:0009196
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=organ_slim
|synonym=
|union_of=
|xref=EHDAA2:0000716;;ncithesaurus:Indifferent_Gonad
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:indifferent gonad
Namespace:FANTOM
Definition:"A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey
Xrefs:
links:

EHDAA2:0000716

ncithesaurus:Indifferent_Gonad
Comments:typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000991(gonad),UBERON:0002050(embryonic structure)
part_of:UBERON:0009196(indifferent external genitalia)



Children

disjoint from:UBERON:0000473 (testis),UBERON:0000992 (female gonad)
develops from:UBERON:0000473 (testis),UBERON:0000992 (female gonad)
part of:UBERON:0010141 (primitive sex cord of indifferent gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009117 (indifferent gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.56e-61FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_27cbc34287601ded82b7eb5b14cd460fp22@Rgs3
5.56e-61FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_27cbc34287601ded82b7eb5b14cd460fp22@Rgs3
4.35e-59FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_18ca1c93c25949062c16a56c3371fbc7p7@Tulp2
4.35e-59FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_18ca1c93c25949062c16a56c3371fbc7p7@Tulp2
7.74e-59FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_987a1657bc8386efd9faa0d6d5fe1256p1@Cst12
7.74e-59FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_987a1657bc8386efd9faa0d6d5fe1256p1@Cst12
4.05e-58FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_854ca5f2616992df6371fb994db8c36ep4@STAR
4.05e-58FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_854ca5f2616992df6371fb994db8c36ep4@STAR
7.96e-58FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_d53a91f819ad87c94a83f1bb01d7d732p6@Folr1
7.96e-58FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_d53a91f819ad87c94a83f1bb01d7d732p6@Folr1
2.1e-57FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_51a3a02e115ec541c2b70b0cbf5812c8p2@Slc25a31
2.1e-57FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_51a3a02e115ec541c2b70b0cbf5812c8p2@Slc25a31
3.2e-57FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_8dd86feefb0740d1d0f161ef1b67720bp1@Asz1
3.2e-57FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_8dd86feefb0740d1d0f161ef1b67720bp1@Asz1
4.39e-57FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_894ee713214709166371bf7b2b6e5c36p4@Taf9b
4.39e-57FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_894ee713214709166371bf7b2b6e5c36p4@Taf9b
1.84e-56FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_12f79e98bf506e5bdecd96d798798326p2@KLF17
1.84e-56FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_12f79e98bf506e5bdecd96d798798326p2@KLF17
2.81e-56FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_b205c8c77b42489794c198daa0b4037ep@chr12:31775417..31775434, -
2.81e-56FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_b205c8c77b42489794c198daa0b4037ep@chr12:31775417..31775434, -
2.81e-56FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_b205c8c77b42489794c198daa0b4037ep1@Tktl1
2.81e-56FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_b205c8c77b42489794c198daa0b4037ep1@Tktl1
4.4e-56FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_329b9b30af7420e876651b0887c22878p@chr5:26334211..26334241, +
4.4e-56FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_329b9b30af7420e876651b0887c22878p@chr5:26334211..26334241, +
6.2e-56FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_425011f8dcc347e96c526bf20c45591fp@chr16:37843615..37843636, -
6.2e-56FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_425011f8dcc347e96c526bf20c45591fp@chrX:93160409..93160432, -
6.2e-56FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_425011f8dcc347e96c526bf20c45591fp1@Sohlh1
6.2e-56FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_425011f8dcc347e96c526bf20c45591fp1@Sohlh1
6.2e-56FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_425011f8dcc347e96c526bf20c45591fp@chr11:69431224..69431241, -
6.2e-56FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_425011f8dcc347e96c526bf20c45591fp@chr8:26314366..26314395, -
6.2e-56FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_425011f8dcc347e96c526bf20c45591fp@chr8:26314366..26314395, -
6.2e-56FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_425011f8dcc347e96c526bf20c45591fp@chr16:37843615..37843636, -
6.2e-56FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_425011f8dcc347e96c526bf20c45591fp@chr11:69431224..69431241, -
6.2e-56FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_425011f8dcc347e96c526bf20c45591fp@chrX:93160409..93160432, -
1.38e-55FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_3e12bbab3bb5db3ea43224294778bdc9p1@Mov10l1
1.38e-55FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_3e12bbab3bb5db3ea43224294778bdc9p1@Mov10l1
3.93e-55FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_efcad37d3f5917726fa97cc9cc0d998cp1@Sycp1
3.93e-55FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_efcad37d3f5917726fa97cc9cc0d998cp1@Sycp1
3.32e-54FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_e2e993430b5da9e8d3b04ac5883d0158p1@Mael
3.32e-54FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_e2e993430b5da9e8d3b04ac5883d0158p1@Mael
5.91e-54FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_7ec492e183cf3bca5de77f64ff2daa79p1@Ccdc152
5.91e-54FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_7ec492e183cf3bca5de77f64ff2daa79p1@Ccdc152
7.21e-54FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_d6bf301764c1ebe6cd5b954d7268f719p2@Asz1
7.21e-54FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_d6bf301764c1ebe6cd5b954d7268f719p2@Asz1
3.37e-53FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_d9dfa7c2e403c6098038775607f10a15p1@Fkbp6
3.37e-53FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_d9dfa7c2e403c6098038775607f10a15p1@Fkbp6
5.2e-53FFCP PHASE2:Mm9::chr13:24026079..24026094,-#_eafa2e1feac89a617d5405cb2b934877p1@Hist1h2ba
5.2e-53FFCP PHASE1:Mm9::chr13:24026079..24026094,-#_eafa2e1feac89a617d5405cb2b934877p1@Hist1h2ba
7.61e-53FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_b4bf2398c7c1e48740e5d0c63b771e76p@chr7:149469129..149469146, +
7.61e-53FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_b4bf2398c7c1e48740e5d0c63b771e76p@chr7:149469129..149469146, +
7.61e-53FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_b4bf2398c7c1e48740e5d0c63b771e76p1@Mir202
7.61e-53FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_b4bf2398c7c1e48740e5d0c63b771e76p1@Mir202
1.62e-52FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_36d302a9975a1d40fd3164c0d003af6ep@chr15:102277099..102277126, +
1.62e-52FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_36d302a9975a1d40fd3164c0d003af6ep@chr15:102277099..102277126, +
1.8e-52FFCP PHASE2:Mm9::chr12:105339370..105339379,+#_faa9eeed4454be8299b32c8273845d60p2@Serpina5
1.8e-52FFCP PHASE1:Mm9::chr12:105339370..105339379,+#_faa9eeed4454be8299b32c8273845d60p2@Serpina5
2.46e-52FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_85e1919dce0370614d948e54a3c7e837p1@Hist1h2aa
2.46e-52FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_85e1919dce0370614d948e54a3c7e837p1@Hist1h2aa
2.69e-52FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_ffb32c5fa5b9e7e7495a22ff907273a0p1@Hormad1
2.69e-52FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_ffb32c5fa5b9e7e7495a22ff907273a0p1@Hormad1
1.97e-51FFCP PHASE2:Mm9::chr19:25580226..25580261,+#_3b875d5b3c02d8041b39d24b04d306a7p2@Dmrt1
1.97e-51FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_3b875d5b3c02d8041b39d24b04d306a7p3@Cst9
1.97e-51FFCP PHASE1:Mm9::chr8:26314291..26314315,-#_3b875d5b3c02d8041b39d24b04d306a7p@chr8:26314291..26314315, -
1.97e-51FFCP PHASE1:Mm9::chr19:25580226..25580261,+#_3b875d5b3c02d8041b39d24b04d306a7p2@Dmrt1
1.97e-51FFCP PHASE2:Mm9::chr8:26314291..26314315,-#_3b875d5b3c02d8041b39d24b04d306a7p@chr8:26314291..26314315, -
1.97e-51FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_3b875d5b3c02d8041b39d24b04d306a7p3@Cst9
2.47e-51FFCP PHASE2:Mm9::chrX:131499234..131499265,-#_10e7ae9dae66e809011bafa4ad1b6a5cp1@Nxf2
2.47e-51FFCP PHASE1:Mm9::chrX:131499234..131499265,-#_10e7ae9dae66e809011bafa4ad1b6a5cp1@Nxf2
4.3e-51FFCP PHASE2:Mm9::chr9:50369410..50369421,-#_d4fd61dcee9198f506e668ff3170a79cp2@Tex12
4.3e-51FFCP PHASE1:Mm9::chr9:50369410..50369421,-#_d4fd61dcee9198f506e668ff3170a79cp2@Tex12
5.44e-51FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_9bb9f90dc942435e82358fc530fd0a97p1@Piwil2
5.44e-51FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_9bb9f90dc942435e82358fc530fd0a97p1@Piwil2
6.54e-51FFCP PHASE2:Mm9::chr10:127031444..127031494,-#_01c2b36a773a8781b1ef19e2e257fb41p@chr10:127031444..127031494, -
6.54e-51FFCP PHASE1:Mm9::chr10:127031444..127031494,-#_01c2b36a773a8781b1ef19e2e257fb41p@chr10:127031444..127031494, -
6.54e-51FFCP PHASE2:Mm9::chr11:69431571..69431587,-#_01c2b36a773a8781b1ef19e2e257fb41p3@Shbg
6.54e-51FFCP PHASE1:Mm9::chr19:25580353..25580364,+#_01c2b36a773a8781b1ef19e2e257fb41p4@Dmrt1
6.54e-51FFCP PHASE1:Mm9::chr17:89600024..89600037,-#_01c2b36a773a8781b1ef19e2e257fb41p2@Fshr
6.54e-51FFCP PHASE1:Mm9::chr2:31332380..31332388,+#_01c2b36a773a8781b1ef19e2e257fb41p@chr2:31332380..31332388, +
6.54e-51FFCP PHASE2:Mm9::chr6:83138985..83138996,+#_01c2b36a773a8781b1ef19e2e257fb41p10@Dctn1
6.54e-51FFCP PHASE1:Mm9::chr6:83138985..83138996,+#_01c2b36a773a8781b1ef19e2e257fb41p10@Dctn1
6.54e-51FFCP PHASE1:Mm9::chr11:69431091..69431096,-#_01c2b36a773a8781b1ef19e2e257fb41p@chr11:69431091..69431096, -
6.54e-51FFCP PHASE2:Mm9::chr19:25580353..25580364,+#_01c2b36a773a8781b1ef19e2e257fb41p4@Dmrt1
6.54e-51FFCP PHASE1:Mm9::chr11:69431571..69431587,-#_01c2b36a773a8781b1ef19e2e257fb41p3@Shbg
6.54e-51FFCP PHASE2:Mm9::chr17:89600024..89600037,-#_01c2b36a773a8781b1ef19e2e257fb41p2@Fshr
6.54e-51FFCP PHASE2:Mm9::chr11:69431091..69431096,-#_01c2b36a773a8781b1ef19e2e257fb41p@chr11:69431091..69431096, -
6.54e-51FFCP PHASE2:Mm9::chr2:31332380..31332388,+#_01c2b36a773a8781b1ef19e2e257fb41p@chr2:31332380..31332388, +
7.2e-51FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_a6a194e5eb6a144736c02fe02ffd0cb9p1@Tex12
7.2e-51FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_a6a194e5eb6a144736c02fe02ffd0cb9p1@Tex12
1.26e-50FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_1d16437fdff2b0bca4b5604ef629e559p1@Gm949
1.26e-50FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_1d16437fdff2b0bca4b5604ef629e559p1@Gm949
1.62e-50FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_47d60b9b8f6f639379e5990658f2ccf9p1@Dazl
1.62e-50FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_47d60b9b8f6f639379e5990658f2ccf9p1@Dazl
3.51e-50FFCP PHASE1:Mm9::chr15:89240661..89240702,-#_b809dc5a65f644f23fbe20081304e033p1@Syce3
3.51e-50FFCP PHASE2:Mm9::chr15:89240661..89240702,-#_b809dc5a65f644f23fbe20081304e033p1@Syce3
3.85e-50FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_031427c5275ce87460fe2ae58672743ap1@Fam178b
3.85e-50FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_031427c5275ce87460fe2ae58672743ap1@Fam178b
5.34e-50FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_d9d74ff026d726dd1238eb49538a34fdp1@NR5A1
5.34e-50FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_d9d74ff026d726dd1238eb49538a34fdp1@NR5A1
3.59e-49FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_963c7c636033c8ba65128db67422bd81p1@Exoc3l2
3.59e-49FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_963c7c636033c8ba65128db67422bd81p1@Exoc3l2

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