Personal tools

UBERON:0007914: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0007914 |name=head or neck bone |namespace= |def= |xref=MA:0000569 |is_a=UBERON:0001474 |synonym= |comment= |alt_id= |disjoint_from= |union_of= ...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0007914
|alt_id=
|name=head or neck bone
|namespace=
|def=
|xref=MA:0000569
|is_a=UBERON:0001474
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007914
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|name=head or neck bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007811
|part_of=UBERON:0007811
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=MA:0000569
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:head or neck bone
Namespace:FANTOM
Xrefs:
links:
MA:0000569

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0007811(craniocervical region)



Children

is a:UBERON:0003457 (head bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007914 (head or neck bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c7b014f591b3f452f653d0547dd682dfp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_c7b014f591b3f452f653d0547dd682dfp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_c7b014f591b3f452f653d0547dd682dfp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_c7b014f591b3f452f653d0547dd682dfp1@Strc
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_c7b014f591b3f452f653d0547dd682dfp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_c7b014f591b3f452f653d0547dd682dfp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_c7b014f591b3f452f653d0547dd682dfp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_c7b014f591b3f452f653d0547dd682dfp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c7b014f591b3f452f653d0547dd682dfp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_c7b014f591b3f452f653d0547dd682dfp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_c7b014f591b3f452f653d0547dd682dfp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_c7b014f591b3f452f653d0547dd682dfp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c7b014f591b3f452f653d0547dd682dfp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c7b014f591b3f452f653d0547dd682dfp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c7b014f591b3f452f653d0547dd682dfp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_c7b014f591b3f452f653d0547dd682dfp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c7b014f591b3f452f653d0547dd682dfp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c7b014f591b3f452f653d0547dd682dfp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c7b014f591b3f452f653d0547dd682dfp3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c7b014f591b3f452f653d0547dd682dfp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_c7b014f591b3f452f653d0547dd682dfp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c7b014f591b3f452f653d0547dd682dfp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c7b014f591b3f452f653d0547dd682dfp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c7b014f591b3f452f653d0547dd682dfp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_c7b014f591b3f452f653d0547dd682dfp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c7b014f591b3f452f653d0547dd682dfp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c7b014f591b3f452f653d0547dd682dfp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c7b014f591b3f452f653d0547dd682dfp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c7b014f591b3f452f653d0547dd682dfp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_c7b014f591b3f452f653d0547dd682dfp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c7b014f591b3f452f653d0547dd682dfp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_c7b014f591b3f452f653d0547dd682dfp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c7b014f591b3f452f653d0547dd682dfp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c7b014f591b3f452f653d0547dd682dfp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c7b014f591b3f452f653d0547dd682dfp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_c7b014f591b3f452f653d0547dd682dfp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_c7b014f591b3f452f653d0547dd682dfp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c7b014f591b3f452f653d0547dd682dfp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_c7b014f591b3f452f653d0547dd682dfp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_c7b014f591b3f452f653d0547dd682dfp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c7b014f591b3f452f653d0547dd682dfp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_c7b014f591b3f452f653d0547dd682dfp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_c7b014f591b3f452f653d0547dd682dfp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_c7b014f591b3f452f653d0547dd682dfp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_c7b014f591b3f452f653d0547dd682dfp3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c7b014f591b3f452f653d0547dd682dfp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_c7b014f591b3f452f653d0547dd682dfp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c7b014f591b3f452f653d0547dd682dfp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c7b014f591b3f452f653d0547dd682dfp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c7b014f591b3f452f653d0547dd682dfp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_c7b014f591b3f452f653d0547dd682dfp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_c7b014f591b3f452f653d0547dd682dfp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_c7b014f591b3f452f653d0547dd682dfp2@Espnl

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007914&oldid=3277925"