UBERON:0007625: Difference between revisions
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|located_in= | |located_in= | ||
|name=pigment epithelium of eye | |name=pigment epithelium of eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000970 | |part_of=UBERON:0000970 | ||
Latest revision as of 18:02, 12 September 2014
| Name: | pigment epithelium of eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | " epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] | ||
| Xrefs: |
| ||
| Synonyms: | "eye pigment epithelium" RELATED [MESH:A.09.371.670] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium) |
|---|---|
| part_of: | UBERON:0000970(eye) |
Children
| is a: | UBERON:0015808 (eye epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11609-120I7 (Lens Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007625 (pigment epithelium of eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-124 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_30b137114a43fc58d50d8212c2f9ae1f | p1@BC033145 |
| 1.31e-124 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_30b137114a43fc58d50d8212c2f9ae1f | p1@BC033145 |
| 1.99e-105 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_c1237a000550d9af10f98ceb7f294116 | p10@SIX3 |
| 1.99e-105 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_c1237a000550d9af10f98ceb7f294116 | p10@SIX3 |
| 1.78e-95 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_f7b16951de1ca1168631bf291c670320 | p7@PTPRU |
| 1.78e-95 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_f7b16951de1ca1168631bf291c670320 | p7@PTPRU |
| 2.25e-81 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_9db165546a758235d935db0ee2cd3af0 | p11@SIX3 |
| 2.25e-81 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_9db165546a758235d935db0ee2cd3af0 | p11@SIX3 |
| 1.51e-79 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_56e0b1d650e6bbfb20ed565c948dea7d | p@chr14:87636652..87636657, - |
| 1.51e-79 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_56e0b1d650e6bbfb20ed565c948dea7d | p@chr14:87636652..87636657, - |
| 1.7e-79 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_3cd0dd6caa1c25128ce947876e65eb57 | p1@ENST00000456467 |
| 1.7e-79 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_3cd0dd6caa1c25128ce947876e65eb57 | p1@ENST00000456467 |
| 3.36e-76 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_4ddf84e1b4134ac5a288a3167588c3bd | p1@ENST00000432125 |
| 3.36e-76 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_4ddf84e1b4134ac5a288a3167588c3bd | p1@ENST00000432125 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_d83340f2c922aa3e2f7b2071abd5990b | p3@BC033145 |
| 6.65e-72 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_d83340f2c922aa3e2f7b2071abd5990b | p3@BC033145 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_d83340f2c922aa3e2f7b2071abd5990b | p@chr7:115723897..115723915, - |
| 6.65e-72 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_d83340f2c922aa3e2f7b2071abd5990b | p@chr7:115723897..115723915, - |
| 9.51e-68 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_dc95c88b2f3cade27eec238a391745df | p3@SIX6 |
| 9.51e-68 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_dc95c88b2f3cade27eec238a391745df | p3@SIX6 |
| 2.26e-64 | FFCP PHASE1:Hg19::chr2:45165994..45166012,-#_b5253d3c7514b2ed72d0b3dc53516826 | p1@ENST00000444871 |
| 2.26e-64 | FFCP PHASE2:Hg19::chr2:45165994..45166012,-#_b5253d3c7514b2ed72d0b3dc53516826 | p1@ENST00000444871 |
| 1.48e-63 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_20bab20fc241b39ff1faadbe8090228f | p11@PAX6 |
| 1.48e-63 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_20bab20fc241b39ff1faadbe8090228f | p11@PAX6 |
| 2.73e-63 | FFCP PHASE2:Hg19::chr2:45166504..45166533,-#_4813cbc17d6f7ccb48ec99ba5b7a126b | p2@ENST00000437916 |
| 2.73e-63 | FFCP PHASE1:Hg19::chr2:45166504..45166533,-#_4813cbc17d6f7ccb48ec99ba5b7a126b | p2@ENST00000437916 |
| 2.95e-63 | FFCP PHASE1:Hg19::chr2:45169179..45169190,+#_a94890275b051a9a03c32c0421cfd041 | p8@SIX3 |
| 2.95e-63 | FFCP PHASE2:Hg19::chr2:45169179..45169190,+#_a94890275b051a9a03c32c0421cfd041 | p8@SIX3 |
| 4.81e-60 | FFCP PHASE1:Hg19::chr18:56940663..56940691,-#_482c747471452ca7b07363cb12deaa06 | p2@RAX |
| 4.81e-60 | FFCP PHASE2:Hg19::chr18:56940663..56940691,-#_482c747471452ca7b07363cb12deaa06 | p2@RAX |
| 6.09e-59 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_2b1df5e20e62e5077cf799ddd159016c | p6@C8orf47 |
| 6.09e-59 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_2b1df5e20e62e5077cf799ddd159016c | p6@C8orf47 |
| 7.25e-58 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_84291644ea7cf5a08fb5cfdf63b5eaf7 | p6@TRPM3 |
| 7.25e-58 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_84291644ea7cf5a08fb5cfdf63b5eaf7 | p6@TRPM3 |
| 8.62e-58 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_799b0acbe4dcec928588c02895e40f9b | p@chr2:35680607..35680613, - |
| 8.62e-58 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_799b0acbe4dcec928588c02895e40f9b | p@chr2:35680607..35680613, - |
| 9.98e-58 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_ccd3af0403193705182689d2793f6975 | p@chr7:115723925..115723935, - |
| 9.98e-58 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_ccd3af0403193705182689d2793f6975 | p@chr7:115723925..115723935, - |
| 1.15e-57 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_cab760611cb3f40d001e76c018fed369 | p@chr7:131803806..131803815, + |
| 1.15e-57 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_cab760611cb3f40d001e76c018fed369 | p@chr7:131803806..131803815, + |
| 1.34e-57 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_75df5f1a34e410ee4fa824e1b0cb0c8d | p@chr13:36052762..36052767, - |
| 1.34e-57 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_75df5f1a34e410ee4fa824e1b0cb0c8d | p@chr13:36052762..36052767, - |
| 1.55e-57 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_6b1518917e649035690aa9b9d50a5ce6 | p@chrX:106198807..106198826, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_6b1518917e649035690aa9b9d50a5ce6 | p@chrX:106198807..106198826, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_6b1518917e649035690aa9b9d50a5ce6 | p@chr16:58896129..58896134, - |
| 1.55e-57 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_6b1518917e649035690aa9b9d50a5ce6 | p@chr16:58896129..58896134, - |
| 6.65e-56 | FFCP PHASE1:Hg19::chr16:82068585..82068600,+#_392512a387a027915dae4c19922a8f17 | p8@HSD17B2 |
| 6.65e-56 | FFCP PHASE2:Hg19::chr16:82068585..82068600,+#_392512a387a027915dae4c19922a8f17 | p8@HSD17B2 |
| 2.82e-55 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_d2e8bf00606f020fe908ae321b789605 | p10@NLGN1 |
| 2.82e-55 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_d2e8bf00606f020fe908ae321b789605 | p10@NLGN1 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_02198aa74088270121f1a76ff5bd6c42 | p@chr13:36052713..36052724, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_02198aa74088270121f1a76ff5bd6c42 | p@chr1:147150847..147150854, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_02198aa74088270121f1a76ff5bd6c42 | p@chr13:36052713..36052724, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_02198aa74088270121f1a76ff5bd6c42 | p@chr1:147150847..147150854, - |
| 5.8e-53 | FFCP PHASE1:Hg19::chr3:98705008..98705016,-#_67715885075c016fd1c87342345b0162 | p@chr3:98705008..98705016, - |
| 5.8e-53 | FFCP PHASE2:Hg19::chr3:98705008..98705016,-#_67715885075c016fd1c87342345b0162 | p@chr3:98705008..98705016, - |
| 7.64e-52 | FFCP PHASE2:Hg19::chr2:45168856..45168867,+#_dba597131999353cb1b8e12eed95e730 | p7@SIX3 |
| 7.64e-52 | FFCP PHASE1:Hg19::chr2:45168856..45168867,+#_dba597131999353cb1b8e12eed95e730 | p7@SIX3 |
| 2.04e-51 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_9ee255ad4303d7d45677bddc3ccc0814 | p2@SIX6 |
| 2.04e-51 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_9ee255ad4303d7d45677bddc3ccc0814 | p2@SIX6 |
| 9.76e-50 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_cd33120e457715e22b1626e78e9dd54a | p4@SIX6 |
| 9.76e-50 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_cd33120e457715e22b1626e78e9dd54a | p4@SIX6 |
| 1.16e-49 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_6da8b0ce17df5216bfa75292704d5295 | p1@OPTC |
| 1.16e-49 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_6da8b0ce17df5216bfa75292704d5295 | p1@OPTC |
| 1.92e-49 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_dcbfbaca5dccf1c2d015f57791327a62 | p8@NBEA |
| 1.92e-49 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_dcbfbaca5dccf1c2d015f57791327a62 | p8@NBEA |
| 1.39e-48 | FFCP PHASE1:Hg19::chr5:149682332..149682346,-#_40309fed21af0ecb04c4adb1823c25a4 | p3@ARSI |
| 1.39e-48 | FFCP PHASE2:Hg19::chr5:149682332..149682346,-#_40309fed21af0ecb04c4adb1823c25a4 | p3@ARSI |
| 2.24e-48 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_d57f17294f5c2c12c7d69931292c0ae6 | p@chr11:31667372..31667383, - |
| 2.24e-48 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_d57f17294f5c2c12c7d69931292c0ae6 | p@chr11:31667372..31667383, - |
| 3.65e-48 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_bcc6c3e20b6af4eb738e9720d2a60404 | p2@RIPPLY1 |
| 3.65e-48 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_bcc6c3e20b6af4eb738e9720d2a60404 | p2@RIPPLY1 |
| 1.87e-47 | FFCP PHASE2:Hg19::chr16:82068905..82068918,+#_9a677a04c72286311abb02f603f554ec | p7@HSD17B2 |
| 1.87e-47 | FFCP PHASE1:Hg19::chr16:82068905..82068918,+#_9a677a04c72286311abb02f603f554ec | p7@HSD17B2 |
| 2.36e-46 | FFCP PHASE2:Hg19::chr14:60975883..60975911,+#_c5e6975bc09c5c63dd5bf1e9487f451a | p1@SIX6 |
| 2.36e-46 | FFCP PHASE1:Hg19::chr14:60975883..60975911,+#_c5e6975bc09c5c63dd5bf1e9487f451a | p1@SIX6 |
| 9.38e-46 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_297c3b05773690bb127d24c3960379ab | p1@ENST00000448923 |
| 9.38e-46 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_297c3b05773690bb127d24c3960379ab | p1@ENST00000448923 |
| 5.37e-45 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_1e4ce5ffc8f69f4350e827e76b0532a6 | p1@CLRN1 |
| 5.37e-45 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_1e4ce5ffc8f69f4350e827e76b0532a6 | p1@CLRN1 |
| 1.33e-44 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_744d236b52cd610813672e1931c84b06 | p@chr8:124692287..124692298, + |
| 1.33e-44 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_744d236b52cd610813672e1931c84b06 | p@chr8:124692287..124692298, + |
| 2.68e-44 | FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_8073b7d351a87be27034560b5c59b99b | p4@PLA2G3 |
| 2.68e-44 | FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_8073b7d351a87be27034560b5c59b99b | p4@PLA2G3 |
| 3.45e-43 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_9398ad822741385b851cb77011337798 | p@chr16:68301840..68301845, + |
| 3.45e-43 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_9398ad822741385b851cb77011337798 | p@chr16:68301840..68301845, + |
| 5.76e-43 | FFCP PHASE1:Hg19::chr13:24190079..24190098,+#_fae4156928245704834f9da0a2415194 | p@chr13:24190079..24190098, + |
| 5.76e-43 | FFCP PHASE2:Hg19::chr13:24190079..24190098,+#_fae4156928245704834f9da0a2415194 | p@chr13:24190079..24190098, + |
| 6.19e-43 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_4d40fe57abadd1259ce8405bb9c29948 | p20@SHROOM3 |
| 6.19e-43 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_4d40fe57abadd1259ce8405bb9c29948 | p20@SHROOM3 |
| 1.77e-42 | FFCP PHASE2:Hg19::chr7:111032939..111032959,-#_d649c64a540295a7f98f2256ad59505d | p3@IMMP2L |
| 1.77e-42 | FFCP PHASE1:Hg19::chr7:111032939..111032959,-#_d649c64a540295a7f98f2256ad59505d | p3@IMMP2L |
| 4.43e-42 | FFCP PHASE2:Hg19::chr2:45166354..45166379,-#_5dc9873f536fc0048f0e6e243d9119b3 | p1@ENST00000437916 |
| 4.43e-42 | FFCP PHASE1:Hg19::chr2:45166354..45166379,-#_5dc9873f536fc0048f0e6e243d9119b3 | p1@ENST00000437916 |
| 6.82e-42 | FFCP PHASE1:Hg19::chr18:56940611..56940660,-#_30e8cda2de1e38f2e2b640541ebc8c95 | p1@RAX |
| 6.82e-42 | FFCP PHASE2:Hg19::chr18:56940611..56940660,-#_30e8cda2de1e38f2e2b640541ebc8c95 | p1@RAX |
| 9.59e-42 | FFCP PHASE2:Hg19::chr2:45171888..45171968,+#_47a279036b929685f93160ccd582a619 | p@chr2:45171888..45171968, + |
| 9.59e-42 | FFCP PHASE1:Hg19::chr2:45171888..45171968,+#_47a279036b929685f93160ccd582a619 | p@chr2:45171888..45171968, + |
| 1.08e-41 | FFCP PHASE2:Hg19::chrX:106163626..106163638,+#_f7a54dacba7e2c8763bf64c7208e189a | p2@CLDN2 |
| 1.08e-41 | FFCP PHASE1:Hg19::chrX:106163626..106163638,+#_f7a54dacba7e2c8763bf64c7208e189a | p2@CLDN2 |
