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{{UBERON
{{UBERON
|id=UBERON:0006965
|alt_id=
|name=vascular cord
|namespace=
|def="The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
|xref=EFO:0003709;;ZFA:0005077
|is_a=UBERON:0005423
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006965
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0004535
|name=vascular cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0014903
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=EFO:0003709;;TAO:0005077;;ZFA:0005077
}}
}}

Latest revision as of 17:59, 12 September 2014

Name:vascular cord
Namespace:FANTOM
Definition:"The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
Xrefs:
links:

EFO:0003709
TAO:0005077

ZFA:0005077

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0014903(primordial vasculature)



Children

develops from:UBERON:0001981 (blood vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006965 (vascular cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.37e-99FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13p2@SOX17
4.37e-99FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13p2@SOX17
3.03e-83FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0p@chr12:96830430..96830450, +
3.03e-83FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0p@chr12:96830430..96830450, +
9.39e-72FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7p4@SULT1B1
9.39e-72FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7p4@SULT1B1
1.22e-71FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9p@chr22:21138343..21138378, +
1.22e-71FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9p@chr22:21138343..21138378, +
3.75e-70FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571p3@SULT1B1
3.75e-70FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571p3@SULT1B1
4.26e-70FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25p@chr3:30334038..30334060, +
4.26e-70FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25p@chr3:30334038..30334060, +
1.65e-69FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812p6@Npy1r
1.65e-69FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812p6@Npy1r
3.42e-69FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903p1@ENST00000439823
3.42e-69FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903p1@ENST00000439823
1.32e-66FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6cp2@ESM1
1.32e-66FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6cp2@ESM1
1.79e-66FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83p@chr1:186946626..186946652, +
1.79e-66FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83p@chr1:186946626..186946652, +
2.82e-66FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511p10@ECE1
2.82e-66FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511p10@ECE1
1.57e-65FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0p8@HHIP
1.57e-65FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0p8@HHIP
4.84e-64FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96p@chr10:4823096..4823144, -
4.84e-64FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96p@chr10:4823096..4823144, -
1.6e-63FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3p10@HHIP
1.6e-63FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3p10@HHIP
1.6e-62FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008bp@chr22:21138313..21138336, +
1.6e-62FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008bp@chr22:21138313..21138336, +
3.56e-60FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daabp4@MMP1
3.56e-60FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daabp4@MMP1
1.21e-59FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ffp6@HHIP
1.21e-59FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ffp6@HHIP
1.43e-59FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5p4@ESM1
1.43e-59FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5p4@ESM1
7.93e-59FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108p5@HHIP
7.93e-59FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108p5@HHIP
1.41e-58FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bdp24@WWTR1
1.41e-58FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bdp24@WWTR1
5.62e-58FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06p@chr11:86649508..86649546, -
5.62e-58FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06p@chr11:86649508..86649546, -
8.9e-57FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1cp4@HHIP
8.9e-57FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1cp4@HHIP
4.2e-56FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp5@Npy1r
4.2e-56FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp4@Il6st
4.2e-56FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp5@Npy1r
4.2e-56FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp4@Il6st
4.77e-56FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1dfp7@HHIP
4.77e-56FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1dfp7@HHIP
1.07e-55FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6p@chr11:102667477..102667490, -
1.07e-55FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6p@chr11:102667477..102667490, -
1.11e-55FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8p@chr2:65009852..65009866, -
1.11e-55FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8p@chr2:65009852..65009866, -
2.0e-55FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157bp@chr11:102668178..102668206, +
2.0e-55FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157bp@chr11:102668178..102668206, +
9.51e-55FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829p@chr4:86700590..86700615, +
9.51e-55FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829p@chr4:86700590..86700615, +
1.16e-54FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656p2@RHOJ
1.16e-54FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656p2@RHOJ
5.43e-54FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649dp@chr11:102662162..102662217, -
5.43e-54FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649dp@chr11:102662162..102662217, -
1.56e-53FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5p3@MMP1
1.56e-53FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5p3@MMP1
2.27e-53FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55p@chr11:128562673..128562716, -
2.27e-53FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55p@chr11:128562673..128562716, -
5.18e-53FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784p@chr4:7846444..7846449, -
5.18e-53FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784p@chr4:7846444..7846449, -
1.64e-52FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:178190171..178190178, +
1.64e-52FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:112043522..112043530, -
1.64e-52FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chrX:160839744..160839754, +
1.64e-52FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14827154..14827169, -
1.64e-52FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:178190171..178190178, +
1.64e-52FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14802633..14802637, -
1.64e-52FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14802633..14802637, -
1.64e-52FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14827154..14827169, -
1.64e-52FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:112043522..112043530, -
1.64e-52FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4p5@Adamts2
1.64e-52FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chrX:160839744..160839754, +
1.64e-52FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:87574327..87574332, +
1.64e-52FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:87574327..87574332, +
1.64e-52FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr8:69228447..69228492, +
1.64e-52FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4p5@Adamts2
1.64e-52FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr8:69228447..69228492, +
4.12e-52FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aap5@MMP1
4.12e-52FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aap5@MMP1
9.8e-52FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8cap@chr11:102661517..102661541, -
9.8e-52FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8cap@chr11:102661517..102661541, -
1.64e-51FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528p5@OXA1L
1.64e-51FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528p5@OXA1L
2.14e-51FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68cp9@HHIP
2.14e-51FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68cp9@HHIP
6.64e-51FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7ddep@chr4:54931911..54931926, -
6.64e-51FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7ddep@chr4:54931911..54931926, -
7.65e-51FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6cp13@HHIP
7.65e-51FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6cp13@HHIP
2.55e-50FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986p@chr11:102668708..102668742, +
2.55e-50FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986p@chr11:102668708..102668742, +
7.98e-50FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40p@chr6:53359400..53359406, +
7.98e-50FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40p@chr6:53359400..53359406, +

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