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{{UBERON
{{UBERON
|id=UBERON:0005863
|alt_id=
|name=cartilaginous condensation
|namespace=
|def="Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator]
|xref=AEO:0000147;;EHDAA2:0003147;;EMAPA:25353;;VSAO:0000092;;XAO:0004022
|is_a=UBERON:0005856
|synonym="cartilage condensation" EXACT [EMAPA:25353];;"cartilagenous condensation" EXACT [EHDAA2:0003147];;"chondrogenic condensation" EXACT [VSAO:0000092]
|comment=AO notes: isa cell condensation in VSAO
|comment=AO notes: isa cell condensation in VSAO
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005866
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005863
|is_a=UBERON:0005856
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=cartilaginous condensation
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004288
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cartilage condensation" EXACT [EMAPA:25353];;"cartilagenous condensation" EXACT [EHDAA2:0003147];;"chondrogenic condensation" EXACT [VSAO:0000092]
|union_of=
|xref=AEO:0000147;;EHDAA2:0003147;;EMAPA:25353;;VSAO:0000092;;XAO:0004022
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:cartilaginous condensation
Namespace:FANTOM
Definition:"Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator]
Xrefs:
links:

AEO:0000147
EHDAA2:0003147
EMAPA:25353
VSAO:0000092

XAO:0004022
Synonyms: "cartilage condensation" EXACT [EMAPA:25353]
"cartilagenous condensation" EXACT [EHDAA2:0003147]
"chondrogenic condensation" EXACT [VSAO:0000092]
Comments:AO notes: isa cell condensation in VSAO

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005856(developing mesenchymal condensation)
develops_from:UBERON:0005866(pre-cartilage condensation)
part_of:UBERON:0004288(skeleton)



Children

is a:UBERON:0010351 (otic capsule cartilage condensation),UBERON:0010881 (limb cartilage element),UBERON:0011094 (vertebra cartilage element)
develops from:UBERON:0002513 (endochondral bone),UBERON:0007844 (cartilage element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005863 (cartilaginous condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359cp@chr3:174737010..174737023, +
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359cp@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fbp@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fbp@chr9:114135497..114135526, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3ep@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3ep@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602dp15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602dp15@SNED1
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554p20@CAPZB
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0p@chr1:19778678..19778689, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cbap@chr2:241897189..241897221, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cbap@chr2:241897189..241897221, -
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3p1@uc010aki.1
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629p6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629p6@SIX4
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bcp3@uc010aki.1
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bcp3@uc010aki.1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828p3@PAX1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828p3@PAX1
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344fp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344fp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3p19@HDAC9
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9ap@chr7:158224707..158224729, -
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9ap@chr7:158224707..158224729, -
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647aep@chr1:65888177..65888194, +
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647aep@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03p3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03p3@NKX3-2
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8ap1@MGC27382
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8ap1@MGC27382
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1p@chr1:24217213..24217226, +
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1p@chr1:24217213..24217226, +
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96p18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96p18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866p@chr13:24914614..24914622, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819p5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819p5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0p@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2p2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2p2@PAX1
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8p16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8p@chr5:140887761..140887777, +
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8p4@NUP54
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ecp@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ecp@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7p1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7p1@NKX3-2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6p10@SYNJ2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79p2@ENST00000518706
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aaep1@ENST00000436845
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aaep1@ENST00000436845
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295p12@CDK5RAP2
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295p12@CDK5RAP2
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418p1@ENST00000413519
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418p1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394cp4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394cp4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302dp@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302dp@chr7:100202784..100202796, -
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048bp8@HOXC6
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048bp8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9ap6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9ap6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9p@chr20:21695435..21695452, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985dp26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985dp26@Myo18a
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_76fb9ca9ca9a088054ee18f3ddc66009p@chr8:75097542..75097549, +
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_76fb9ca9ca9a088054ee18f3ddc66009p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_76fb9ca9ca9a088054ee18f3ddc66009p@chr8:75097542..75097549, +
4.33e-33FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_76fb9ca9ca9a088054ee18f3ddc66009p@chr2:32482372..32482381, +

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