UBERON:0005294: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=genital ridge | |name=genital ridge | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0004122 | |part_of=UBERON:0000922;;UBERON:0004122 | ||
Latest revision as of 17:52, 12 September 2014
| Name: | genital ridge | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The precursor to the gonads." [Wikipedia:Gonadal_ridge] | ||
| Xrefs: |
| ||
| Synonyms: |
"crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge] "gonadal ridge" EXACT [Wikipedia:Gonadal_ridge] | ||
| Comments: | TODO - check developmental relationships. merge with urogenital ridge? |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004876(urogenital ridge) |
| part_of: | UBERON:0000922(embryo),UBERON:0004122(genitourinary system) |
Children
| develops from: | UBERON:0005295 (sex cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005294 (genital ridge), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fe | p26@BDNF |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fe | p26@BDNF |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640f | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640f | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640f | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640f | p9@RARRES1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973 | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973 | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973 | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973 | p@chr13:53030077..53030083, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3 | p@chr2:19551668..19551679, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3 | p@chr2:19551668..19551679, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6 | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6 | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6 | p21@EPS8 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6 | p21@EPS8 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735 | p@chr5:90830481..90830492, + |
| 6.41e-58 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00 | p4@Spink12 |
| 6.41e-58 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00 | p4@Spink12 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044d | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044d | p8@TCF21 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044d | p8@TCF21 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044d | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044d | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044d | p@chr2:177009137..177009140, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7 | p11@USP25 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20 | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20 | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20 | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20 | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20 | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20 | p11@EFCAB4A |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5 | p51@CDK6 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5 | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5 | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5 | p13@SOS2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5 | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5 | p13@SOS2 |
| 4.52e-44 | FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866 | p@chr17:75581992..75582009, + |
| 4.52e-44 | FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866 | p@chr17:75581992..75582009, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8 | p@chr3:194214959..194214968, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8 | p@chr3:194214959..194214968, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr2:102604493..102604499,+#_55f45cfd3562b88b8ee98bd9ce0d804e | p@chr2:102604493..102604499, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr2:102604493..102604499,+#_55f45cfd3562b88b8ee98bd9ce0d804e | p@chr2:102604493..102604499, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_55f45cfd3562b88b8ee98bd9ce0d804e | p@chr11:77282391..77282402, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_55f45cfd3562b88b8ee98bd9ce0d804e | p@chr15:34522001..34522013, + |
