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{{UBERON
{{UBERON
|id=UBERON:0005253
|name=head mesenchyme
|namespace=
|def="Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260]
|xref=EFO:0003492;;EHDAA:179;;EHDAA2:0000732;;EMAPA:16098;;VHOG:0000332;;ZFA:0000113
|is_a=UBERON:0003104
|synonym="cephalic mesenchyme" EXACT [MP:0011260]
|comment=todo - merge?
|alt_id=
|alt_id=
|disjoint_from=
|comment=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005253
|is_a=UBERON:0003104 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=head mesenchyme
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0000922;;UBERON:0000033;;UBERON:0000922;;UBERON:0009142
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
|subset=vertebrate_core
|synonym="cephalic mesenchyme" EXACT [MP:0011260]
|union_of=
|xref=EFO:0003492;;EHDAA2:0000732;;EHDAA:179;;EMAPA:16098;;EMAPA:16269;;TAO:0000113;;VHOG:0000332;;ZFA:0000113
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:head mesenchyme
Namespace:FANTOM
Definition:"Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260]
Xrefs:
links:

EFO:0003492
EHDAA2:0000732
EHDAA:179
EMAPA:16098
EMAPA:16269
TAO:0000113
VHOG:0000332

ZFA:0000113
Synonyms: "cephalic mesenchyme" EXACT [MP:0011260]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0005291(embryonic tissue)
part_of:UBERON:0000033(head),UBERON:0000922(embryo),UBERON:0000033(head),UBERON:0000922(embryo),UBERON:0009142(entire embryonic mesenchyme)



Children

is a:UBERON:0006904 (head mesenchyme from mesoderm),UBERON:0007213 (mesenchyme derived from head neural crest),UBERON:0009494 (pharyngeal arch mesenchymal region)
develops from:UBERON:0004461 (musculature of head)
part of:UBERON:0009617 (head paraxial mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005253 (head mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_aecedfb46cd1280bfdd58f4f7ba8e1b1p14@C17orf67
1.55e-98FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_aecedfb46cd1280bfdd58f4f7ba8e1b1p14@C17orf67
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_3c66da496b8a1b48a71e003bc36a955bp1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_3c66da496b8a1b48a71e003bc36a955bp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_3c66da496b8a1b48a71e003bc36a955bp@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_3c66da496b8a1b48a71e003bc36a955bp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_3c66da496b8a1b48a71e003bc36a955bp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_3c66da496b8a1b48a71e003bc36a955bp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_3c66da496b8a1b48a71e003bc36a955bp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_3c66da496b8a1b48a71e003bc36a955bp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_3c66da496b8a1b48a71e003bc36a955bp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_3c66da496b8a1b48a71e003bc36a955bp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_3c66da496b8a1b48a71e003bc36a955bp@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_3c66da496b8a1b48a71e003bc36a955bp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_3c66da496b8a1b48a71e003bc36a955bp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_3c66da496b8a1b48a71e003bc36a955bp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_3c66da496b8a1b48a71e003bc36a955bp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_3c66da496b8a1b48a71e003bc36a955bp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_3c66da496b8a1b48a71e003bc36a955bp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_3c66da496b8a1b48a71e003bc36a955bp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_3c66da496b8a1b48a71e003bc36a955bp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_3c66da496b8a1b48a71e003bc36a955bp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_3c66da496b8a1b48a71e003bc36a955bp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_3c66da496b8a1b48a71e003bc36a955bp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_3c66da496b8a1b48a71e003bc36a955bp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_3c66da496b8a1b48a71e003bc36a955bp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_3c66da496b8a1b48a71e003bc36a955bp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_3c66da496b8a1b48a71e003bc36a955bp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_3c66da496b8a1b48a71e003bc36a955bp3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_3c66da496b8a1b48a71e003bc36a955bp1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_3c66da496b8a1b48a71e003bc36a955bp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_3c66da496b8a1b48a71e003bc36a955bp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_3c66da496b8a1b48a71e003bc36a955bp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_3c66da496b8a1b48a71e003bc36a955bp6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_3c66da496b8a1b48a71e003bc36a955bp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_3c66da496b8a1b48a71e003bc36a955bp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_3c66da496b8a1b48a71e003bc36a955bp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_3c66da496b8a1b48a71e003bc36a955bp1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_3c66da496b8a1b48a71e003bc36a955bp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_3c66da496b8a1b48a71e003bc36a955bp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_3c66da496b8a1b48a71e003bc36a955bp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_3c66da496b8a1b48a71e003bc36a955bp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_3c66da496b8a1b48a71e003bc36a955bp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_3c66da496b8a1b48a71e003bc36a955bp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_3c66da496b8a1b48a71e003bc36a955bp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_3c66da496b8a1b48a71e003bc36a955bp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_3c66da496b8a1b48a71e003bc36a955bp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_3c66da496b8a1b48a71e003bc36a955bp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_3c66da496b8a1b48a71e003bc36a955bp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_3c66da496b8a1b48a71e003bc36a955bp3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_3c66da496b8a1b48a71e003bc36a955bp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_3c66da496b8a1b48a71e003bc36a955bp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_3c66da496b8a1b48a71e003bc36a955bp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_3c66da496b8a1b48a71e003bc36a955bp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_3c66da496b8a1b48a71e003bc36a955bp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_3c66da496b8a1b48a71e003bc36a955bp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_3c66da496b8a1b48a71e003bc36a955bp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_3c66da496b8a1b48a71e003bc36a955bp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_3c66da496b8a1b48a71e003bc36a955bp15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_3c66da496b8a1b48a71e003bc36a955bp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_3c66da496b8a1b48a71e003bc36a955bp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_3c66da496b8a1b48a71e003bc36a955bp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_3c66da496b8a1b48a71e003bc36a955bp4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_3c66da496b8a1b48a71e003bc36a955bp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_3c66da496b8a1b48a71e003bc36a955bp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_3c66da496b8a1b48a71e003bc36a955bp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_3c66da496b8a1b48a71e003bc36a955bp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_3c66da496b8a1b48a71e003bc36a955bp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_3c66da496b8a1b48a71e003bc36a955bp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_3c66da496b8a1b48a71e003bc36a955bp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_3c66da496b8a1b48a71e003bc36a955bp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_3c66da496b8a1b48a71e003bc36a955bp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_3c66da496b8a1b48a71e003bc36a955bp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_3c66da496b8a1b48a71e003bc36a955bp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_3c66da496b8a1b48a71e003bc36a955bp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_3c66da496b8a1b48a71e003bc36a955bp1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_3c66da496b8a1b48a71e003bc36a955bp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_3c66da496b8a1b48a71e003bc36a955bp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_3c66da496b8a1b48a71e003bc36a955bp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_3c66da496b8a1b48a71e003bc36a955bp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_3c66da496b8a1b48a71e003bc36a955bp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_3c66da496b8a1b48a71e003bc36a955bp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_3c66da496b8a1b48a71e003bc36a955bp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_3c66da496b8a1b48a71e003bc36a955bp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_3c66da496b8a1b48a71e003bc36a955bp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_3c66da496b8a1b48a71e003bc36a955bp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_3c66da496b8a1b48a71e003bc36a955bp2@Tmprss3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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