Personal tools

UBERON:0005171: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0005171 |name=hepatic duct |namespace= |def="The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from...")
 
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005171
|alt_id=
|name=hepatic duct
|namespace=
|def="The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
|xref=EHDAA2:0000741;;EHDAA:3049;;EMAPA:16843;;EMAPA:18672;;galen:HepaticDuct;;MA:0000357;;ncithesaurus:Hepatic_Duct;;OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA;;SCTID:245399002;;TAO:0001100;;VHOG:0000219;;ZFA:0001100
|is_a=UBERON:0002394
|synonym=
|comment=TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
|comment=TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005171
|is_a=UBERON:0002394
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=hepatic duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001173
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A duct that carries bile from the liver to the small intestine.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A duct that carries bile from the liver to the small intestine.[TAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0000741;;EHDAA:3049;;EMAPA:16843;;EMAPA:18672;;galen:HepaticDuct;;MA:0000357;;ncithesaurus:Hepatic_Duct;;OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA;;SCTID:245399002;;TAO:0001100;;VHOG:0000219;;ZFA:0001100
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:hepatic duct
Namespace:FANTOM
Definition:"The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
Xrefs:
links:

EHDAA2:0000741
EHDAA:3049
EMAPA:16843
EMAPA:18672
galen:HepaticDuct
MA:0000357
ncithesaurus:Hepatic_Duct
OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA
SCTID:245399002
TAO:0001100
VHOG:0000219

ZFA:0001100
Comments:TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002394(bile duct)
part_of:UBERON:0001173(biliary tree)



Children

develops from:UBERON:0001280 (liver parenchyma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005171 (hepatic duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_163eb2863c0778f62d6dc7c29d82ee3ap2@ENST00000448698
9.74e-88FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_163eb2863c0778f62d6dc7c29d82ee3ap2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_4d0af0543b7169012267506dfa6a469bp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_4d0af0543b7169012267506dfa6a469bp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_4d0af0543b7169012267506dfa6a469bp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_4d0af0543b7169012267506dfa6a469bp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_4d0af0543b7169012267506dfa6a469bp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_4d0af0543b7169012267506dfa6a469bp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_4d0af0543b7169012267506dfa6a469bp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_4d0af0543b7169012267506dfa6a469bp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_4d0af0543b7169012267506dfa6a469bp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_4d0af0543b7169012267506dfa6a469bp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_4d0af0543b7169012267506dfa6a469bp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_4d0af0543b7169012267506dfa6a469bp@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_4d0af0543b7169012267506dfa6a469bp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_4d0af0543b7169012267506dfa6a469bp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_4d0af0543b7169012267506dfa6a469bp@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_4d0af0543b7169012267506dfa6a469bp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_4d0af0543b7169012267506dfa6a469bp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_4d0af0543b7169012267506dfa6a469bp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_4d0af0543b7169012267506dfa6a469bp@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_4d0af0543b7169012267506dfa6a469bp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_4d0af0543b7169012267506dfa6a469bp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_4d0af0543b7169012267506dfa6a469bp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_4d0af0543b7169012267506dfa6a469bp@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_4d0af0543b7169012267506dfa6a469bp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_4d0af0543b7169012267506dfa6a469bp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_4d0af0543b7169012267506dfa6a469bp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_4d0af0543b7169012267506dfa6a469bp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_4d0af0543b7169012267506dfa6a469bp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_4d0af0543b7169012267506dfa6a469bp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_4d0af0543b7169012267506dfa6a469bp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_4d0af0543b7169012267506dfa6a469bp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_4d0af0543b7169012267506dfa6a469bp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_4d0af0543b7169012267506dfa6a469bp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_4d0af0543b7169012267506dfa6a469bp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_4d0af0543b7169012267506dfa6a469bp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_4d0af0543b7169012267506dfa6a469bp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_4d0af0543b7169012267506dfa6a469bp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_4d0af0543b7169012267506dfa6a469bp@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_4d0af0543b7169012267506dfa6a469bp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_4d0af0543b7169012267506dfa6a469bp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_4d0af0543b7169012267506dfa6a469bp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_4d0af0543b7169012267506dfa6a469bp6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_4d0af0543b7169012267506dfa6a469bp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_4d0af0543b7169012267506dfa6a469bp@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_4d0af0543b7169012267506dfa6a469bp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_4d0af0543b7169012267506dfa6a469bp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_4d0af0543b7169012267506dfa6a469bp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_4d0af0543b7169012267506dfa6a469bp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_4d0af0543b7169012267506dfa6a469bp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_4d0af0543b7169012267506dfa6a469bp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_4d0af0543b7169012267506dfa6a469bp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_4d0af0543b7169012267506dfa6a469bp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_4d0af0543b7169012267506dfa6a469bp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_4d0af0543b7169012267506dfa6a469bp@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_4d0af0543b7169012267506dfa6a469bp@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_4d0af0543b7169012267506dfa6a469bp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_4d0af0543b7169012267506dfa6a469bp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_4d0af0543b7169012267506dfa6a469bp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_4d0af0543b7169012267506dfa6a469bp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_4d0af0543b7169012267506dfa6a469bp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_4d0af0543b7169012267506dfa6a469bp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_4d0af0543b7169012267506dfa6a469bp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_4d0af0543b7169012267506dfa6a469bp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_4d0af0543b7169012267506dfa6a469bp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_4d0af0543b7169012267506dfa6a469bp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_4d0af0543b7169012267506dfa6a469bp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_4d0af0543b7169012267506dfa6a469bp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_4d0af0543b7169012267506dfa6a469bp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_4d0af0543b7169012267506dfa6a469bp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_4d0af0543b7169012267506dfa6a469bp@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_4d0af0543b7169012267506dfa6a469bp@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_4d0af0543b7169012267506dfa6a469bp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_4d0af0543b7169012267506dfa6a469bp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_4d0af0543b7169012267506dfa6a469bp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_4d0af0543b7169012267506dfa6a469bp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_4d0af0543b7169012267506dfa6a469bp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_4d0af0543b7169012267506dfa6a469bp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_4d0af0543b7169012267506dfa6a469bp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_4d0af0543b7169012267506dfa6a469bp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_4d0af0543b7169012267506dfa6a469bp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_4d0af0543b7169012267506dfa6a469bp@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_4d0af0543b7169012267506dfa6a469bp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_4d0af0543b7169012267506dfa6a469bp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_4d0af0543b7169012267506dfa6a469bp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_4d0af0543b7169012267506dfa6a469bp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_4d0af0543b7169012267506dfa6a469bp@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_4d0af0543b7169012267506dfa6a469bp8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_4d0af0543b7169012267506dfa6a469bp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_4d0af0543b7169012267506dfa6a469bp@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_4d0af0543b7169012267506dfa6a469bp@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_4d0af0543b7169012267506dfa6a469bp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_4d0af0543b7169012267506dfa6a469bp@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_4d0af0543b7169012267506dfa6a469bp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_4d0af0543b7169012267506dfa6a469bp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_4d0af0543b7169012267506dfa6a469bp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_4d0af0543b7169012267506dfa6a469bp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_4d0af0543b7169012267506dfa6a469bp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_4d0af0543b7169012267506dfa6a469bp@chr10:21389022..21389032, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "A duct that carries bile from the liver to the small intestine.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005171&oldid=3277741"