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{{UBERON
{{UBERON
|id=UBERON:0005153
|alt_id=
|name=epithelial bud
|namespace=
|def="A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]
|xref=
|is_a=UBERON:0005157
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005153
|is_a=UBERON:0005157
|is_obsolete=
|located_in=
|located_in=
|name=epithelial bud
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:50, 12 September 2014

Name:epithelial bud
Namespace:FANTOM
Definition:"A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005157(epithelial fold)



Children

is a:UBERON:0000118 (lung bud),UBERON:0003820 (prostate bud),UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005153 (epithelial bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_6287ee896b6b9305c45a314e795dd1c1p4@Tbx4
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_6287ee896b6b9305c45a314e795dd1c1p4@Tbx4
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_5142d203a5d91fe2c979aa38a5359db1p1@ENSMUST00000134305
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_5142d203a5d91fe2c979aa38a5359db1p1@ENSMUST00000134305
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_f8aab53f810b2a74a05ecd516dc631c5p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_f8aab53f810b2a74a05ecd516dc631c5p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_ab68af0688db03d042cf179990ba7972p6@Tbx4
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_ab68af0688db03d042cf179990ba7972p6@Tbx4
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_8aef9c521183748ab76034caad94255ap@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_8aef9c521183748ab76034caad94255ap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_8aef9c521183748ab76034caad94255ap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_8aef9c521183748ab76034caad94255ap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_8aef9c521183748ab76034caad94255ap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_8aef9c521183748ab76034caad94255ap@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_8aef9c521183748ab76034caad94255ap@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_8aef9c521183748ab76034caad94255ap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_8aef9c521183748ab76034caad94255ap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_8aef9c521183748ab76034caad94255ap@chr4:138812977..138812992, +
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_4fbbfebe3004abd31e2b7ecf855a9010p8@Nkx2-1
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_4fbbfebe3004abd31e2b7ecf855a9010p8@Nkx2-1
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_578a7b75a63ffe333ae754f4d693dcccp2@E030019B13Rik
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_578a7b75a63ffe333ae754f4d693dcccp2@E030019B13Rik
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_afabe12aa4652523f0f39baefd4232cfp10@Nebl
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_afabe12aa4652523f0f39baefd4232cfp10@Nebl
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_7bb938d53691e4c05c7d68a0cdcdb0edp9@Nkx2-1
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_7bb938d53691e4c05c7d68a0cdcdb0edp9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_c99f17d2049857025d268bc413c48185p3@Trpm6
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_c99f17d2049857025d268bc413c48185p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_c99f17d2049857025d268bc413c48185p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_c99f17d2049857025d268bc413c48185p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_c99f17d2049857025d268bc413c48185p3@E030019B13Rik
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_c99f17d2049857025d268bc413c48185p3@E030019B13Rik
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_3688f5ab048a8c4b987aff34edc721d1p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_3688f5ab048a8c4b987aff34edc721d1p@chr14:115241755..115241762, -
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_aa1912b64db7b4ef7f74819af4b437b2p@chr4:138812999..138813015, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_aa1912b64db7b4ef7f74819af4b437b2p@chr4:138812999..138813015, +
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_99593e1a0f2d874a0f8da25e7abb34d8p3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_99593e1a0f2d874a0f8da25e7abb34d8p4@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_99593e1a0f2d874a0f8da25e7abb34d8p4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_99593e1a0f2d874a0f8da25e7abb34d8p3@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_99593e1a0f2d874a0f8da25e7abb34d8p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_99593e1a0f2d874a0f8da25e7abb34d8p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_99593e1a0f2d874a0f8da25e7abb34d8p@chr2:66524237..66524246, -
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_33718f660f72db084a0b20443c297050p@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_33718f660f72db084a0b20443c297050p@chr5:120282691..120282701, +
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_6a391edbeaca28dfc3ca6e9cb6c98426p4@E030019B13Rik
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_6a391edbeaca28dfc3ca6e9cb6c98426p4@E030019B13Rik
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_09eaa2db067e800e8f6587ccf2920e5ep@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_09eaa2db067e800e8f6587ccf2920e5ep@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_09eaa2db067e800e8f6587ccf2920e5ep@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_09eaa2db067e800e8f6587ccf2920e5ep@chr14:70922007..70922052, +
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_c53ba1463524ee193a058c15154b1a8bp@chr5:28785436..28785450, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_c53ba1463524ee193a058c15154b1a8bp@chr5:28785436..28785450, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_b92f823018b6d6abd2fda53ce566a401p@chr14:70922459..70922482, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_b92f823018b6d6abd2fda53ce566a401p@chr14:70922459..70922482, -
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_eff409930c65632df03468c048f81b09p4@Etv5
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_eff409930c65632df03468c048f81b09p4@Etv5
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_d3f0d8fed98eae36380aa224746b2485p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_d3f0d8fed98eae36380aa224746b2485p4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_d3f0d8fed98eae36380aa224746b2485p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_d3f0d8fed98eae36380aa224746b2485p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_d3f0d8fed98eae36380aa224746b2485p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_d3f0d8fed98eae36380aa224746b2485p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_d3f0d8fed98eae36380aa224746b2485p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_d3f0d8fed98eae36380aa224746b2485p4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_d3f0d8fed98eae36380aa224746b2485p@chr6:72259797..72259814, +
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_17eae6d5b0999701f37aa9a3c08286dcp@chr6:72264609..72264653, -
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_17eae6d5b0999701f37aa9a3c08286dcp@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_01bc8eaf1fcc5e6db51459c64e60d799p@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_01bc8eaf1fcc5e6db51459c64e60d799p@chr6:129378567..129378573, -
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_753728d01f8d7b117679f7d29b4a8350p16@Pde5a
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_753728d01f8d7b117679f7d29b4a8350p16@Pde5a
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_1fcecf12249d0feb830874bce807e828p7@Nkx2-1
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_1fcecf12249d0feb830874bce807e828p7@Nkx2-1
6.54e-51FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_39dad7f36b17f30b03978913858348cfp@chr6:72264657..72264693, -
6.54e-51FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_39dad7f36b17f30b03978913858348cfp@chr6:72259749..72259765, +
6.54e-51FFCP PHASE2:Mm9::chr12:57630433..57630438,-#_39dad7f36b17f30b03978913858348cfp6@E030019B13Rik
6.54e-51FFCP PHASE1:Mm9::chr16:19673341..19673350,-#_39dad7f36b17f30b03978913858348cfp@chr16:19673341..19673350, -
6.54e-51FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_39dad7f36b17f30b03978913858348cfp@chr14:70931508..70931519, +
6.54e-51FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_39dad7f36b17f30b03978913858348cfp@chr2:152591095..152591110, -
6.54e-51FFCP PHASE2:Mm9::chr14:70931508..70931519,+#_39dad7f36b17f30b03978913858348cfp@chr14:70931508..70931519, +
6.54e-51FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_39dad7f36b17f30b03978913858348cfp@chr6:72260761..72260774, -
6.54e-51FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_39dad7f36b17f30b03978913858348cfp9@Ptprm
6.54e-51FFCP PHASE2:Mm9::chr9:14522825..14522837,-#_39dad7f36b17f30b03978913858348cfp3@Piwil4
6.54e-51FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_39dad7f36b17f30b03978913858348cfp6@E030019B13Rik
6.54e-51FFCP PHASE1:Mm9::chr2:152591095..152591110,-#_39dad7f36b17f30b03978913858348cfp@chr2:152591095..152591110, -
6.54e-51FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_39dad7f36b17f30b03978913858348cfp@chr14:41949922..41949935, +
6.54e-51FFCP PHASE2:Mm9::chr2:126950686..126950702,-#_39dad7f36b17f30b03978913858348cfp@chr2:126950686..126950702, -

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