Personal tools

UBERON:0004911: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004911
|alt_id=
|name=epithelium of female gonad
|namespace=
|def="An epithelium surrounding an ovary." [OBOL:automatic]
|xref=BTO:0003661;;FBbt:00004896
|is_a=UBERON:0004909
|synonym="ovarian epithelium" EXACT [OBOL:automatic];;"ovarian sheath" NARROW SENSU [FBbt:00004896];;"ovary epithelium" EXACT [OBOL:automatic]
|comment=Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
|comment=Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium surrounding an ovary." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004911
|is_a=UBERON:0004909 ;;UBERON:0014404
|is_obsolete=
|located_in=
|located_in=
|name=epithelium of female gonad
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000992
|part_of=UBERON:0000992
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="ovarian epithelium" EXACT [OBOL:automatic];;"ovarian sheath" NARROW SENSU [FBbt:00004896];;"ovary epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0003661;;FBbt:00004896
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:epithelium of female gonad
Namespace:FANTOM
Definition:"An epithelium surrounding an ovary." [OBOL:automatic]
Xrefs:
links:

BTO:0003661

FBbt:00004896
Synonyms: "ovarian epithelium" EXACT [OBOL:automatic]
"ovarian sheath" NARROW SENSU [FBbt:00004896]
"ovary epithelium" EXACT [OBOL:automatic]
Comments:Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004909(epithelium of gonad),UBERON:0014404(female anatomical structure)
part_of:UBERON:0000992(female gonad)



Children

is a:FF:0104129 (ovary epithelium cell line)
derives from:FF:0104511 (serous cystadenocarcinoma cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004911 (epithelium of female gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr20:15871874..15871910,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15871874..15871910, -
5.42e-195FFCP PHASE1:Hg19::chr10:85857839..85857840,-#_1b37a0950fb578f9190411599ee760cbp@chr10:85857839..85857840, -
5.42e-195FFCP PHASE1:Hg19::chr2:231906019..231906031,+#_1b37a0950fb578f9190411599ee760cbp6@C2orf72
5.42e-195FFCP PHASE2:Hg19::chr6:137844183..137844191,-#_1b37a0950fb578f9190411599ee760cbp@chr6:137844183..137844191, -
5.42e-195FFCP PHASE2:Hg19::chr17:36068486..36068493,+#_1b37a0950fb578f9190411599ee760cbp@chr17:36068486..36068493, +
5.42e-195FFCP PHASE2:Hg19::chr12:132681039..132681046,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681039..132681046, +
5.42e-195FFCP PHASE1:Hg19::chr12:123070114..123070123,+#_1b37a0950fb578f9190411599ee760cbp@chr12:123070114..123070123, +
5.42e-195FFCP PHASE1:Hg19::chr20:15891295..15891297,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15891295..15891297, -
5.42e-195FFCP PHASE2:Hg19::chr8:20070210..20070250,+#_1b37a0950fb578f9190411599ee760cbp@chr8:20070210..20070250, +
5.42e-195FFCP PHASE2:Hg19::chr22:46812806..46812838,-#_1b37a0950fb578f9190411599ee760cbp@chr22:46812806..46812838, -
5.42e-195FFCP PHASE2:Hg19::chr8:142247940..142247948,-#_1b37a0950fb578f9190411599ee760cbp@chr8:142247940..142247948, -
5.42e-195FFCP PHASE2:Hg19::chr13:23486051..23486062,+#_1b37a0950fb578f9190411599ee760cbp@chr13:23486051..23486062, +
5.42e-195FFCP PHASE1:Hg19::chrX:35711783..35711785,+#_1b37a0950fb578f9190411599ee760cbp@chrX:35711783..35711785, +
5.42e-195FFCP PHASE2:Hg19::chr2:34971950..34971953,+#_1b37a0950fb578f9190411599ee760cbp@chr2:34971950..34971953, +
5.42e-195FFCP PHASE1:Hg19::chr14:64405176..64405183,+#_1b37a0950fb578f9190411599ee760cbp@chr14:64405176..64405183, +
5.42e-195FFCP PHASE2:Hg19::chr8:101363016..101363029,+#_1b37a0950fb578f9190411599ee760cbp@chr8:101363016..101363029, +
5.42e-195FFCP PHASE1:Hg19::chr20:15942024..15942025,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15942024..15942025, -
5.42e-195FFCP PHASE2:Hg19::chr4:159446395..159446403,+#_1b37a0950fb578f9190411599ee760cbp@chr4:159446395..159446403, +
5.42e-195FFCP PHASE2:Hg19::chr20:15873011..15873014,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15873011..15873014, -
5.42e-195FFCP PHASE1:Hg19::chr1:46787487..46787492,-#_1b37a0950fb578f9190411599ee760cbp@chr1:46787487..46787492, -
5.42e-195FFCP PHASE2:Hg19::chr1:214650069..214650072,-#_1b37a0950fb578f9190411599ee760cbp@chr1:214650069..214650072, -
5.42e-195FFCP PHASE2:Hg19::chr3:168861573..168861582,-#_1b37a0950fb578f9190411599ee760cbp@chr3:168861573..168861582, -
5.42e-195FFCP PHASE1:Hg19::chr4:175204717..175204728,-#_1b37a0950fb578f9190411599ee760cbp17@FBXO8
5.42e-195FFCP PHASE2:Hg19::chr4:135331403..135331405,-#_1b37a0950fb578f9190411599ee760cbp@chr4:135331403..135331405, -
5.42e-195FFCP PHASE1:Hg19::chr17:36068486..36068493,+#_1b37a0950fb578f9190411599ee760cbp@chr17:36068486..36068493, +
5.42e-195FFCP PHASE2:Hg19::chr12:132681059..132681070,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681059..132681070, +
5.42e-195FFCP PHASE1:Hg19::chr7:134627808..134627842,+#_1b37a0950fb578f9190411599ee760cbp@chr7:134627808..134627842, +
5.42e-195FFCP PHASE1:Hg19::chr6:137844183..137844191,-#_1b37a0950fb578f9190411599ee760cbp@chr6:137844183..137844191, -
5.42e-195FFCP PHASE1:Hg19::chr22:31739255..31739259,-#_1b37a0950fb578f9190411599ee760cbp28@PATZ1
5.42e-195FFCP PHASE2:Hg19::chr6:64049378..64049403,-#_1b37a0950fb578f9190411599ee760cbp@chr6:64049378..64049403, -
5.42e-195FFCP PHASE1:Hg19::chr8:20070210..20070250,+#_1b37a0950fb578f9190411599ee760cbp@chr8:20070210..20070250, +
5.42e-195FFCP PHASE1:Hg19::chr12:132681039..132681046,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681039..132681046, +
5.42e-195FFCP PHASE1:Hg19::chr2:34971950..34971953,+#_1b37a0950fb578f9190411599ee760cbp@chr2:34971950..34971953, +
5.42e-195FFCP PHASE1:Hg19::chrX:16530591..16530601,-#_1b37a0950fb578f9190411599ee760cbp@chrX:16530591..16530601, -
5.42e-195FFCP PHASE1:Hg19::chr8:142247940..142247948,-#_1b37a0950fb578f9190411599ee760cbp@chr8:142247940..142247948, -
5.42e-195FFCP PHASE1:Hg19::chr8:101363016..101363029,+#_1b37a0950fb578f9190411599ee760cbp@chr8:101363016..101363029, +
5.42e-195FFCP PHASE2:Hg19::chr12:132680939..132680977,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132680939..132680977, +
5.42e-195FFCP PHASE2:Hg19::chr4:159541085..159541093,+#_1b37a0950fb578f9190411599ee760cbp@chr4:159541085..159541093, +
5.42e-195FFCP PHASE2:Hg19::chr20:15878694..15878728,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15878694..15878728, -
5.42e-195FFCP PHASE2:Hg19::chr1:214650077..214650084,-#_1b37a0950fb578f9190411599ee760cbp@chr1:214650077..214650084, -
5.42e-195FFCP PHASE1:Hg19::chr20:15873011..15873014,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15873011..15873014, -
5.42e-195FFCP PHASE2:Hg19::chr16:2106134..2106163,+#_1b37a0950fb578f9190411599ee760cbp18@TSC2
5.42e-195FFCP PHASE2:Hg19::chr11:705180..705187,+#_1b37a0950fb578f9190411599ee760cbp39@EPS8L2
5.42e-195FFCP PHASE1:Hg19::chr3:168861573..168861582,-#_1b37a0950fb578f9190411599ee760cbp@chr3:168861573..168861582, -
5.42e-195FFCP PHASE2:Hg19::chr18:11959017..11959052,+#_1b37a0950fb578f9190411599ee760cbp@chr18:11959017..11959052, +
5.42e-195FFCP PHASE1:Hg19::chr22:46812806..46812838,-#_1b37a0950fb578f9190411599ee760cbp@chr22:46812806..46812838, -
5.42e-195FFCP PHASE1:Hg19::chr13:23486051..23486062,+#_1b37a0950fb578f9190411599ee760cbp@chr13:23486051..23486062, +
5.42e-195FFCP PHASE2:Hg19::chr5:31936363..31936370,+#_1b37a0950fb578f9190411599ee760cbp19@PDZD2
5.42e-195FFCP PHASE2:Hg19::chr20:15898490..15898493,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15898490..15898493, -
5.42e-195FFCP PHASE1:Hg19::chr18:11959017..11959052,+#_1b37a0950fb578f9190411599ee760cbp@chr18:11959017..11959052, +
5.42e-195FFCP PHASE2:Hg19::chr4:159430869..159430885,-#_1b37a0950fb578f9190411599ee760cbp1@ENST00000502566
5.42e-195FFCP PHASE2:Hg19::chr6:64050722..64050726,-#_1b37a0950fb578f9190411599ee760cbp@chr6:64050722..64050726, -
5.42e-195FFCP PHASE2:Hg19::chr3:168802151..168802153,-#_1b37a0950fb578f9190411599ee760cbp@chr3:168802151..168802153, -
5.42e-195FFCP PHASE2:Hg19::chr11:89223721..89223728,-#_1b37a0950fb578f9190411599ee760cbp@chr11:89223721..89223728, -
5.42e-195FFCP PHASE1:Hg19::chr12:132681059..132681070,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681059..132681070, +
5.42e-195FFCP PHASE1:Hg19::chr4:159446395..159446403,+#_1b37a0950fb578f9190411599ee760cbp@chr4:159446395..159446403, +
5.42e-195FFCP PHASE2:Hg19::chr2:231906019..231906031,+#_1b37a0950fb578f9190411599ee760cbp6@C2orf72
5.42e-195FFCP PHASE2:Hg19::chr20:15871874..15871910,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15871874..15871910, -
5.42e-195FFCP PHASE1:Hg19::chr4:135331403..135331405,-#_1b37a0950fb578f9190411599ee760cbp@chr4:135331403..135331405, -
5.42e-195FFCP PHASE1:Hg19::chr1:214650069..214650072,-#_1b37a0950fb578f9190411599ee760cbp@chr1:214650069..214650072, -
5.42e-195FFCP PHASE2:Hg19::chr12:132681008..132681011,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681008..132681011, +
5.42e-195FFCP PHASE1:Hg19::chr20:15878694..15878728,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15878694..15878728, -
5.42e-195FFCP PHASE2:Hg19::chr10:85857839..85857840,-#_1b37a0950fb578f9190411599ee760cbp@chr10:85857839..85857840, -
5.42e-195FFCP PHASE2:Hg19::chr6:14049473..14049508,+#_1b37a0950fb578f9190411599ee760cbp@chr6:14049473..14049508, +
5.42e-195FFCP PHASE2:Hg19::chr20:62113538..62113571,-#_1b37a0950fb578f9190411599ee760cbp@chr20:62113538..62113571, -
5.42e-195FFCP PHASE2:Hg19::chrX:35711783..35711785,+#_1b37a0950fb578f9190411599ee760cbp@chrX:35711783..35711785, +
5.42e-195FFCP PHASE1:Hg19::chr6:64049378..64049403,-#_1b37a0950fb578f9190411599ee760cbp@chr6:64049378..64049403, -
5.42e-195FFCP PHASE1:Hg19::chr12:132680939..132680977,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132680939..132680977, +
5.42e-195FFCP PHASE1:Hg19::chr5:31936363..31936370,+#_1b37a0950fb578f9190411599ee760cbp19@PDZD2
5.42e-195FFCP PHASE1:Hg19::chr20:15898490..15898493,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15898490..15898493, -
5.42e-195FFCP PHASE2:Hg19::chr14:64405176..64405183,+#_1b37a0950fb578f9190411599ee760cbp@chr14:64405176..64405183, +
5.42e-195FFCP PHASE2:Hg19::chr12:123070114..123070123,+#_1b37a0950fb578f9190411599ee760cbp@chr12:123070114..123070123, +
5.42e-195FFCP PHASE2:Hg19::chr1:46787487..46787492,-#_1b37a0950fb578f9190411599ee760cbp@chr1:46787487..46787492, -
5.42e-195FFCP PHASE1:Hg19::chr11:705180..705187,+#_1b37a0950fb578f9190411599ee760cbp39@EPS8L2
5.42e-195FFCP PHASE1:Hg19::chr4:159541085..159541093,+#_1b37a0950fb578f9190411599ee760cbp@chr4:159541085..159541093, +
5.42e-195FFCP PHASE1:Hg19::chr3:168802151..168802153,-#_1b37a0950fb578f9190411599ee760cbp@chr3:168802151..168802153, -
5.42e-195FFCP PHASE2:Hg19::chr4:175204717..175204728,-#_1b37a0950fb578f9190411599ee760cbp17@FBXO8
5.42e-195FFCP PHASE1:Hg19::chr1:214650077..214650084,-#_1b37a0950fb578f9190411599ee760cbp@chr1:214650077..214650084, -
5.42e-195FFCP PHASE2:Hg19::chr20:15891295..15891297,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15891295..15891297, -
5.42e-195FFCP PHASE2:Hg19::chr7:134627808..134627842,+#_1b37a0950fb578f9190411599ee760cbp@chr7:134627808..134627842, +
5.42e-195FFCP PHASE1:Hg19::chr11:89223721..89223728,-#_1b37a0950fb578f9190411599ee760cbp@chr11:89223721..89223728, -
5.42e-195FFCP PHASE2:Hg19::chr22:31739255..31739259,-#_1b37a0950fb578f9190411599ee760cbp28@PATZ1
5.42e-195FFCP PHASE1:Hg19::chr4:159430869..159430885,-#_1b37a0950fb578f9190411599ee760cbp1@ENST00000502566
5.42e-195FFCP PHASE1:Hg19::chr6:64050722..64050726,-#_1b37a0950fb578f9190411599ee760cbp@chr6:64050722..64050726, -
5.42e-195FFCP PHASE1:Hg19::chr6:14049473..14049508,+#_1b37a0950fb578f9190411599ee760cbp@chr6:14049473..14049508, +
5.42e-195FFCP PHASE1:Hg19::chr20:62113538..62113571,-#_1b37a0950fb578f9190411599ee760cbp@chr20:62113538..62113571, -
5.42e-195FFCP PHASE2:Hg19::chr20:15942024..15942025,-#_1b37a0950fb578f9190411599ee760cbp@chr20:15942024..15942025, -
5.42e-195FFCP PHASE1:Hg19::chr12:132681008..132681011,+#_1b37a0950fb578f9190411599ee760cbp@chr12:132681008..132681011, +
5.42e-195FFCP PHASE2:Hg19::chrX:16530591..16530601,-#_1b37a0950fb578f9190411599ee760cbp@chrX:16530591..16530601, -
5.42e-195FFCP PHASE1:Hg19::chr16:2106134..2106163,+#_1b37a0950fb578f9190411599ee760cbp18@TSC2
9.37e-99FFCP PHASE2:Hg19::chr18:69246146..69246156,-#_362cb0e4c19aa3f2ace395043c0b59e8p3@LOC100505776
9.37e-99FFCP PHASE1:Hg19::chr6:24323980..24323989,-#_362cb0e4c19aa3f2ace395043c0b59e8p@chr6:24323980..24323989, -
9.37e-99FFCP PHASE1:Hg19::chr18:69246146..69246156,-#_362cb0e4c19aa3f2ace395043c0b59e8p3@LOC100505776
9.37e-99FFCP PHASE1:Hg19::chr13:23467567..23467577,+#_362cb0e4c19aa3f2ace395043c0b59e8p@chr13:23467567..23467577, +
9.37e-99FFCP PHASE1:Hg19::chr5:175799252..175799262,-#_362cb0e4c19aa3f2ace395043c0b59e8p@chr5:175799252..175799262, -
9.37e-99FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_362cb0e4c19aa3f2ace395043c0b59e8p33@SMTN
9.37e-99FFCP PHASE1:Hg19::chr6:75233360..75233363,+#_362cb0e4c19aa3f2ace395043c0b59e8p@chr6:75233360..75233363, +
9.37e-99FFCP PHASE1:Hg19::chr12:132681018..132681026,+#_362cb0e4c19aa3f2ace395043c0b59e8p@chr12:132681018..132681026, +
9.37e-99FFCP PHASE1:Hg19::chr20:15967658..15967661,+#_362cb0e4c19aa3f2ace395043c0b59e8p@chr20:15967658..15967661, +
9.37e-99FFCP PHASE2:Hg19::chr4:175184241..175184250,-#_362cb0e4c19aa3f2ace395043c0b59e8p14@FBXO8

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004911&oldid=3277718"