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{{UBERON
{{UBERON
|id=UBERON:0004765
|alt_id=
|name=skeletal element
|namespace=
|def="Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
|xref=AAO:0011129;;galen:SkeletalStructure;;TAO:0001890;;VSAO:0000128;;XAO:0004012;;ZFA:0005494
|is_a=UBERON:0000062
|synonym=
|comment=TODO - add more general class for other kinds of mineralized tissue
|comment=TODO - add more general class for other kinds of mineralized tissue
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004765
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=skeletal element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001434
|part_of=UBERON:0001434
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string;;UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string;;UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string
|is_obsolete=
|subset=organ_slim;;uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0011129;;galen:SkeletalStructure;;TAO:0001890;;VSAO:0000128;;XAO:0004012;;ZFA:0005494
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:skeletal element
Namespace:FANTOM
Definition:"Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
Xrefs:
links:

AAO:0011129
galen:SkeletalStructure
TAO:0001890
VSAO:0000128
XAO:0004012

ZFA:0005494
Comments:TODO - add more general class for other kinds of mineralized tissue
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0001474 (bone element),UBERON:0004339 (calvarium),UBERON:0004637 (otic capsule),UBERON:0004756 (dermal skeletal element),UBERON:0007844 (cartilage element),UBERON:0010363 (endochondral element),UBERON:0010913 (vertebral element)
part of:UBERON:0004755 (skeletal tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004765 (skeletal element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.04e-99FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06p@chr1:161187824..161187847, +
5.04e-99FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06p@chr1:161187824..161187847, +
3.8e-95FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357bp@chr1:161188661..161188679, +
3.8e-95FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357bp@chr1:161188661..161188679, +
4.88e-95FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824ap@chr16:50313426..50313459, +
4.88e-95FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824ap@chr16:50313426..50313459, +
1.03e-93FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63p@chr7:77050554..77050601, +
1.03e-93FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63p@chr7:77050554..77050601, +
1.6e-93FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76p7@EMILIN2
1.6e-93FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76p7@EMILIN2
1.79e-92FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1p@chr1:161188746..161188758, +
1.79e-92FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1p@chr1:161188746..161188758, +
2.94e-92FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014fp@chr17:7482481..7482508, -
2.94e-92FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014fp@chr17:7482481..7482508, -
1.74e-91FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02p5@IFI30
1.74e-91FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02p5@IFI30
6.66e-90FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6bp@chr4:3387239..3387324, -
6.66e-90FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6bp@chr4:3387239..3387324, -
2.82e-89FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9p@chr7:2832730..2832791, +
2.82e-89FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9p@chr7:2832730..2832791, +
8.14e-89FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0dep15@MGAT1
8.14e-89FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0dep15@MGAT1
4.13e-88FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00p7@IFI30
4.13e-88FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00p7@IFI30
4.97e-88FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4p8@CHI3L2
4.97e-88FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4p8@CHI3L2
8.34e-88FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52p1@AK126179
8.34e-88FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52p1@AK126179
5.04e-87FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8p@chr2:145429606..145429658, +
5.04e-87FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8p@chr2:145429606..145429658, +
2.42e-86FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6bp@chr19:18286116..18286156, +
2.42e-86FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6bp@chr19:18286116..18286156, +
2.54e-86FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3cp2@CD300C
2.54e-86FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3cp2@CD300C
1.19e-85FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166p1@CYP1B1-AS1
1.19e-85FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166p1@CYP1B1-AS1
2.28e-85FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05p@chr15:65174546..65174583, -
2.28e-85FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05p@chr15:65174546..65174583, -
3.3e-85FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5p7@FNIP2
3.3e-85FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5p7@FNIP2
8.06e-85FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8bp7@RNF13
8.06e-85FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8bp7@RNF13
8.09e-85FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955cp@chr4:185314125..185314143, -
8.09e-85FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955cp@chr4:185314125..185314143, -
1.34e-84FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83p@chr19:52299474..52299504, -
1.34e-84FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83p@chr19:52299474..52299504, -
1.96e-84FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97ep1@ENST00000425320
1.96e-84FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97ep1@ENST00000425320
4.6e-84FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979p@chr19:18288064..18288080, +
4.6e-84FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979p@chr19:18288064..18288080, +
6.57e-84FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4p@chr1:161188686..161188721, +
6.57e-84FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4p@chr1:161188686..161188721, +
9.62e-84FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8ap@chr10:73648356..73648408, -
9.62e-84FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8ap@chr10:73648356..73648408, -
9.89e-84FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26p@chr2:119726719..119726744, +
9.89e-84FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26p@chr2:119726719..119726744, +
1.39e-83FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320p@chr4:185314151..185314178, -
1.39e-83FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320p@chr4:185314151..185314178, -
3.45e-83FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15bp@chr4:185314188..185314207, -
3.45e-83FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15bp@chr4:185314188..185314207, -
8.52e-83FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5ap@chrX:37664331..37664352, +
8.52e-83FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5ap@chrX:37664331..37664352, +
9.21e-83FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562p2@ZEB2-AS1
9.21e-83FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562p2@ZEB2-AS1
9.87e-83FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0becp@chrX:153286067..153286101, -
9.87e-83FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0becp@chrX:153286067..153286101, -
1.39e-82FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1p@chr8:116588888..116588904, +
1.39e-82FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1p@chr8:116588888..116588904, +
1.48e-82FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313p4@RNF115
1.48e-82FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313p4@RNF115
2.2e-82FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04p8@CTSS
2.2e-82FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04p8@CTSS
2.48e-82FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736p@chr2:129283966..129283970, +
2.48e-82FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736p@chr2:129283966..129283970, +
3.79e-82FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fap@chr1:161188826..161188842, +
3.79e-82FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fap@chr1:161188826..161188842, +
4.48e-82FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6dp@chr1:26602990..26603008, +
4.48e-82FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6dp@chr1:26602990..26603008, +
4.69e-82FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398p5@CU676849, p5@CU689079
4.69e-82FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398p5@CU676849, p5@CU689079
5.1e-82FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34ap@chr1:108593061..108593077, +
5.1e-82FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34ap@chr1:108593061..108593077, +
1.66e-81FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fep@chr19:18285955..18285972, +
1.66e-81FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fep@chr19:18285955..18285972, +
2.34e-81FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500dp@chr20:1517991..1518011, -
2.34e-81FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500dp@chr20:1517991..1518011, -
9.54e-81FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8p6@IFI30
9.54e-81FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8p6@IFI30
1.15e-80FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9fp@chr19:18283959..18283993, +
1.15e-80FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9fp@chr19:18283959..18283993, +
1.17e-80FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0bp12@MGAT1
1.17e-80FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0bp12@MGAT1
1.31e-80FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369cp4@ST18
1.31e-80FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369cp4@ST18
1.35e-80FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6bp4@EIF2AK1
1.35e-80FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6bp4@EIF2AK1
2.02e-80FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6ap@chr17:7483714..7483726, +
2.02e-80FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6ap@chr17:7483714..7483726, +
2.73e-80FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45p@chr19:51625924..51625942, +
2.73e-80FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45p@chr19:51625924..51625942, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.