UBERON:0004458: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004458
|name=body cavity or lining
|namespace=
|def=
|xref=MA:0000005
|is_a=UBERON:0001062
|synonym=
|comment=
|alt_id=
|disjoint_from=
|union_...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004458 | |||
|is_a=UBERON:0001062 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=body cavity or lining | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym= | |||
|union_of=UBERON:0002323;;UBERON:0004457 | |||
|xref=EMAPA:16060;;MA:0000005 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001062(anatomical entity) |
|---|---|
| union_of: | UBERON:0002323(body cavity),UBERON:0004457(cavity lining) |
Children
| is a: | UBERON:0002323 (body cavity),UBERON:0004457 (cavity lining) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
- 10201-103F3 (seminal vesicle, adult)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
- 10201-103F3 (seminal vesicle, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004458 (body cavity or lining), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.62e-38 | FFCP PHASE1:Mm9::chr2:164481543..164481613,+#_800e202f48c9ecd5b04ce2d04ac7c5a9 | p1@Wfdc10 |
| 2.62e-38 | FFCP PHASE2:Mm9::chr2:164481543..164481613,+#_800e202f48c9ecd5b04ce2d04ac7c5a9 | p1@Wfdc10 |
| 6.02e-38 | FFCP PHASE2:Mm9::chr16:5227918..5227923,-#_456a34fc9dd0b7555133d7e667c9950d | p@chr16:5227918..5227923, - |
| 6.02e-38 | FFCP PHASE1:Mm9::chr16:5227918..5227923,-#_456a34fc9dd0b7555133d7e667c9950d | p@chr16:5227918..5227923, - |
| 2.43e-34 | FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_500507e4f4162c441d6678ab0e156b6a | p7@Tulp2 |
| 2.43e-34 | FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_500507e4f4162c441d6678ab0e156b6a | p7@Tulp2 |
| 1.77e-31 | FFCP PHASE2:Mm9::chrX:130516261..130516293,-#_8d204a4974c2fabf524917ca29c2b537 | p2@Sytl4 |
| 1.77e-31 | FFCP PHASE1:Mm9::chrX:130516261..130516293,-#_8d204a4974c2fabf524917ca29c2b537 | p2@Sytl4 |
| 3.73e-31 | FFCP PHASE1:Mm9::chr2:104966659..104966672,-#_96486aaff53a49fc3fe860cc972b982d | p1@AI314831 |
| 3.73e-31 | FFCP PHASE2:Mm9::chr2:104966659..104966672,-#_96486aaff53a49fc3fe860cc972b982d | p1@AI314831 |
| 7.49e-31 | FFCP PHASE2:Mm9::chr2:104966545..104966586,-#_c32e5a2e82e89095b17d89237f69277d | p1@ENSMUST00000174870 |
| 7.49e-31 | FFCP PHASE1:Mm9::chr2:104966545..104966586,-#_c32e5a2e82e89095b17d89237f69277d | p1@ENSMUST00000174870 |
| 1.28e-30 | FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_f2a149b6de8fa51b263ac862bab99dce | p3@Fkbp5 |
| 1.28e-30 | FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_f2a149b6de8fa51b263ac862bab99dce | p3@Fkbp5 |
| 7.15e-30 | FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_5c243eba195a28e09cc86667134d6fbd | p@chr12:31775417..31775434, - |
| 7.15e-30 | FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_5c243eba195a28e09cc86667134d6fbd | p@chr5:26334211..26334241, + |
| 7.15e-30 | FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_5c243eba195a28e09cc86667134d6fbd | p@chr12:31775417..31775434, - |
| 7.15e-30 | FFCP PHASE1:Mm9::chr4:141375242..141375280,-#_5c243eba195a28e09cc86667134d6fbd | p3@Cela2a |
| 7.15e-30 | FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_5c243eba195a28e09cc86667134d6fbd | p@chr5:26334211..26334241, + |
| 7.15e-30 | FFCP PHASE2:Mm9::chr4:141375242..141375280,-#_5c243eba195a28e09cc86667134d6fbd | p3@Cela2a |
| 9.19e-30 | FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_471b1fbdffcb5ad8ab23fda9f5bf2781 | p2@Slc25a31 |
| 9.19e-30 | FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_471b1fbdffcb5ad8ab23fda9f5bf2781 | p2@Slc25a31 |
| 1.02e-29 | FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_9c31db8ec562d8cdc0f08c40be938c4b | p1@Asz1 |
| 1.02e-29 | FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_9c31db8ec562d8cdc0f08c40be938c4b | p1@Asz1 |
| 3.94e-29 | FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_6b2074a5f84ee865784b3b4a0b085739 | p1@NR5A1 |
| 3.94e-29 | FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_6b2074a5f84ee865784b3b4a0b085739 | p1@NR5A1 |
| 6.6e-29 | FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_d392d1d02aed07f6d29c696e0e4a1006 | p6@Folr1 |
| 6.6e-29 | FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_d392d1d02aed07f6d29c696e0e4a1006 | p6@Folr1 |
| 8.26e-29 | FFCP PHASE2:Mm9::chr5:109484637..109484648,+#_d882019cf58798b7d914d379b7b0970e | p@chr5:109484637..109484648, + |
| 8.26e-29 | FFCP PHASE1:Mm9::chr5:109484637..109484648,+#_d882019cf58798b7d914d379b7b0970e | p@chr5:109484637..109484648, + |
| 2.59e-28 | FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_1e3463647667ade03fa7c8c8fa378cc4 | p2@Kctd14 |
| 2.59e-28 | FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_1e3463647667ade03fa7c8c8fa378cc4 | p2@Kctd14 |
| 3.27e-28 | FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_85f95a0c344261ede941ae32c9034417 | p1@Mov10l1 |
| 3.27e-28 | FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_85f95a0c344261ede941ae32c9034417 | p1@Mov10l1 |
| 4.11e-28 | FFCP PHASE2:Mm9::chr8:4248188..4248219,+#_4d52d7fbc73bbf35a842ee79cee16dff | p2@Gm14378 |
| 4.11e-28 | FFCP PHASE1:Mm9::chr8:4248188..4248219,+#_4d52d7fbc73bbf35a842ee79cee16dff | p2@Gm14378 |
| 5.98e-28 | FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_f74a16fd4f3d37e777d8511dd1ab2b83 | p1@Sycp1 |
| 5.98e-28 | FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_f74a16fd4f3d37e777d8511dd1ab2b83 | p1@Sycp1 |
| 6.21e-28 | FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_3a744b607ab4b558cd5a165d22ecbf98 | p4@Fam81a |
| 6.21e-28 | FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_3a744b607ab4b558cd5a165d22ecbf98 | p4@Fam81a |
| 7.94e-28 | FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_53928bbcdcd90d1cd98eb07c907c7143 | p2@Asz1 |
| 7.94e-28 | FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_53928bbcdcd90d1cd98eb07c907c7143 | p2@Asz1 |
| 1.17e-27 | FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_adec65633198228f34fbeb1fa4d628fd | p@chr19:58804381..58804392, + |
| 1.17e-27 | FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_adec65633198228f34fbeb1fa4d628fd | p@chr6:30494986..30494997, + |
| 1.17e-27 | FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_adec65633198228f34fbeb1fa4d628fd | p@chr19:58804381..58804392, + |
| 1.17e-27 | FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_adec65633198228f34fbeb1fa4d628fd | p22@Rgs3 |
| 1.17e-27 | FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_adec65633198228f34fbeb1fa4d628fd | p22@Rgs3 |
| 1.17e-27 | FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_adec65633198228f34fbeb1fa4d628fd | p@chr6:30494986..30494997, + |
| 1.17e-27 | FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_adec65633198228f34fbeb1fa4d628fd | p3@Cst9 |
| 1.17e-27 | FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_adec65633198228f34fbeb1fa4d628fd | p3@Cst9 |
| 1.19e-27 | FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_73e0cf6115cb3e5713b6438f9600873a | p@chr15:102277099..102277126, + |
| 1.19e-27 | FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_73e0cf6115cb3e5713b6438f9600873a | p@chr15:102277099..102277126, + |
| 1.25e-27 | FFCP PHASE2:Mm9::chr15:76701495..76701535,-#_46d11e7541c23acf8e84796cfd4cba74 | p3@Zfp251 |
| 1.25e-27 | FFCP PHASE1:Mm9::chr15:76701495..76701535,-#_46d11e7541c23acf8e84796cfd4cba74 | p3@Zfp251 |
| 1.28e-27 | FFCP PHASE2:Mm9::chr4:129300189..129300196,-#_e46021981ca26460a78205c0a9be8f8f | p3@Ccdc28b |
| 1.28e-27 | FFCP PHASE1:Mm9::chr4:129300189..129300196,-#_e46021981ca26460a78205c0a9be8f8f | p3@Ccdc28b |
| 1.4e-27 | FFCP PHASE1:Mm9::chr10:81037444..81037483,+#_b11a97d71b19f5ee81785f91e65b6060 | p5@Tle2 |
| 1.4e-27 | FFCP PHASE2:Mm9::chr10:81037444..81037483,+#_b11a97d71b19f5ee81785f91e65b6060 | p5@Tle2 |
| 1.78e-27 | FFCP PHASE1:Mm9::chr1:157079840..157079859,-#_bc0311ecc52189bd48b730bd65aa67c9 | p1@BC034090 |
| 1.78e-27 | FFCP PHASE2:Mm9::chr11:116355895..116355908,-#_bc0311ecc52189bd48b730bd65aa67c9 | p4@Prpsap1 |
| 1.78e-27 | FFCP PHASE1:Mm9::chr11:116355895..116355908,-#_bc0311ecc52189bd48b730bd65aa67c9 | p4@Prpsap1 |
| 1.78e-27 | FFCP PHASE2:Mm9::chr1:157079840..157079859,-#_bc0311ecc52189bd48b730bd65aa67c9 | p1@BC034090 |
| 6.09e-27 | FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_185b77dc1ad690c44e63c1e988c08302 | p1@Mael |
| 6.09e-27 | FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_185b77dc1ad690c44e63c1e988c08302 | p1@Mael |
| 6.1e-27 | FFCP PHASE1:Mm9::chr7:52741730..52741769,+#_33b2f62e7fd1d12d0c96a7d70f6d6b2e | p2@Tulp2 |
| 6.1e-27 | FFCP PHASE2:Mm9::chr7:52741730..52741769,+#_33b2f62e7fd1d12d0c96a7d70f6d6b2e | p2@Tulp2 |
| 7.41e-27 | FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_33249d3926dd1fa8950ad50326691bac | p@chr7:149469129..149469146, + |
| 7.41e-27 | FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_33249d3926dd1fa8950ad50326691bac | p1@Fkbp6 |
| 7.41e-27 | FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_33249d3926dd1fa8950ad50326691bac | p@chr7:149469129..149469146, + |
| 7.41e-27 | FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_33249d3926dd1fa8950ad50326691bac | p1@Fkbp6 |
| 8.1e-27 | FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_33ed56433116ced2d9a49382b008e855 | p1@Mir202 |
| 8.1e-27 | FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_33ed56433116ced2d9a49382b008e855 | p1@Mir202 |
| 1.95e-26 | FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_e9071198b479b003e30f2428bd014bc7 | p1@Hormad1 |
| 1.95e-26 | FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_e9071198b479b003e30f2428bd014bc7 | p1@Hormad1 |
| 2.04e-26 | FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_885698381e1f5632f29a8db0313752e5 | p1@Hist1h2aa |
| 2.04e-26 | FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_885698381e1f5632f29a8db0313752e5 | p1@Hist1h2aa |
| 2.56e-26 | FFCP PHASE1:Mm9::chr2:38570011..38570034,-#_a869804f8a17f90cb2a24df32277706d | p1@Nr5a1 |
| 2.56e-26 | FFCP PHASE2:Mm9::chr2:38570011..38570034,-#_a869804f8a17f90cb2a24df32277706d | p1@Nr5a1 |
| 3.54e-26 | FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_d1b9eb9b4af44eab79652f04929cece0 | p1@Piwil2 |
| 3.54e-26 | FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_d1b9eb9b4af44eab79652f04929cece0 | p1@Piwil2 |
| 4.11e-26 | FFCP PHASE1:Mm9::chr2:104966713..104966727,-#_539387f5e62a435a8b0c137e49b5fb9d | p2@AI314831 |
| 4.11e-26 | FFCP PHASE2:Mm9::chr2:104966713..104966727,-#_539387f5e62a435a8b0c137e49b5fb9d | p2@AI314831 |
| 4.25e-26 | FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_160344e374da885dee4d27228e516f3f | p1@Tex12 |
| 4.25e-26 | FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_160344e374da885dee4d27228e516f3f | p1@Tex12 |
| 4.45e-26 | FFCP PHASE2:Mm9::chr2:104966510..104966538,-#_cca5cb3661ddcc5f492f0e649f9513bf | p2@ENSMUST00000174870 |
| 4.45e-26 | FFCP PHASE1:Mm9::chr2:104966510..104966538,-#_cca5cb3661ddcc5f492f0e649f9513bf | p2@ENSMUST00000174870 |
| 5.35e-26 | FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_3a55d8491df37e4a7e377ef11b498bf0 | p1@Gm949 |
| 5.35e-26 | FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_3a55d8491df37e4a7e377ef11b498bf0 | p1@Gm949 |
| 9.55e-26 | FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_962483042c278b4fff6c32673030685a | p1@Exoc3l2 |
| 9.55e-26 | FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_962483042c278b4fff6c32673030685a | p1@Exoc3l2 |
| 1.06e-25 | FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_01a15543b0c6bd3a22fd532ffe8cf484 | p1@Fam178b |
| 1.06e-25 | FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_01a15543b0c6bd3a22fd532ffe8cf484 | p1@Fam178b |
| 1.3e-25 | FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_fa25eb5f66bfaf66a6334aebc84b0274 | p1@Cst12 |
| 1.3e-25 | FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_fa25eb5f66bfaf66a6334aebc84b0274 | p1@Cst12 |
| 1.55e-25 | FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_246eb95299299f068fbd53b42038960f | p1@Tdrd12 |
| 1.55e-25 | FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_246eb95299299f068fbd53b42038960f | p1@Tdrd12 |
| 1.63e-25 | FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_05b68c03e18dd67d3aacd4be7ed23c3f | p4@Taf9b |
| 1.63e-25 | FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_05b68c03e18dd67d3aacd4be7ed23c3f | p4@Taf9b |
| 1.85e-25 | FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_19da76680c1f47909314c1368772a9b6 | p2@Exoc3l2 |
| 1.85e-25 | FFCP PHASE1:Mm9::chr19:58815004..58815018,+#_19da76680c1f47909314c1368772a9b6 | p@chr19:58815004..58815018, + |
