UBERON:0004375: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004375
|name=bone of appendage
|namespace=
|def="A bone that is part of an appendage [Obol]." [OBOL:automatic]
|xref=
|is_a=UBERON:0001474
|synonym...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A bone that is part of an appendage [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004375 | |||
|is_a=UBERON:0004120 ;;UBERON:0010740 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON: | |name=bone of free limb or fin | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0004708;;UBERON:0011582 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="appendage bone" EXACT [] | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:45, 12 September 2014
| Name: | bone of free limb or fin |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A bone that is part of an appendage [Obol]." [OBOL:automatic] |
| Synonyms: | "appendage bone" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0010740(bone of appendage girdle complex) |
|---|---|
| part_of: | UBERON:0004708(paired limb/fin),UBERON:0011582(paired limb/fin skeleton) |
Children
| is a: | UBERON:0002428 (limb bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004375 (bone of free limb or fin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_47f0d42b4b0c51a8cfe5f5dbc9f64d97 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_47f0d42b4b0c51a8cfe5f5dbc9f64d97 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_3284d3b421390bde192502d64c9faf86 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_3284d3b421390bde192502d64c9faf86 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_3284d3b421390bde192502d64c9faf86 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_3284d3b421390bde192502d64c9faf86 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_3284d3b421390bde192502d64c9faf86 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_3284d3b421390bde192502d64c9faf86 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_ce6f51b4d4073b2e62bbb54c2349be41 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_ce6f51b4d4073b2e62bbb54c2349be41 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_51baca1a29ca8e8cfa5f2bf23f50e050 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_51baca1a29ca8e8cfa5f2bf23f50e050 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_067953fc744fe9a58231649edee63a58 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_067953fc744fe9a58231649edee63a58 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_067953fc744fe9a58231649edee63a58 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_067953fc744fe9a58231649edee63a58 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_067953fc744fe9a58231649edee63a58 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_067953fc744fe9a58231649edee63a58 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_067953fc744fe9a58231649edee63a58 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_067953fc744fe9a58231649edee63a58 | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_22b0bf6309f2253992c65c42b4d43a64 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_22b0bf6309f2253992c65c42b4d43a64 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_9da6733e85e683b6645f6f77f4177b32 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_9da6733e85e683b6645f6f77f4177b32 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_2e48d1e7348389b956e1e8e9dba07a8b | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_2e48d1e7348389b956e1e8e9dba07a8b | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_7f21f39c9749d3b2d36671a7f12e65d5 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_7f21f39c9749d3b2d36671a7f12e65d5 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_2ce24a3003b376c764cab0c34f4acd2e | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_2ce24a3003b376c764cab0c34f4acd2e | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_84c3c74765c2916eaa0f9e202077bdb8 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_84c3c74765c2916eaa0f9e202077bdb8 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a2f1f7b0450e07ae8e09bc49d8cda6fa | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a2f1f7b0450e07ae8e09bc49d8cda6fa | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_81cb6571ac66c65346ae64af122e67db | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_81cb6571ac66c65346ae64af122e67db | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_81cb6571ac66c65346ae64af122e67db | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_81cb6571ac66c65346ae64af122e67db | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_65d59d1054edb6193bd5311207f80dfb | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_65d59d1054edb6193bd5311207f80dfb | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_65d59d1054edb6193bd5311207f80dfb | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_65d59d1054edb6193bd5311207f80dfb | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f8f8b0b4286e39d58edfc3cbc98e5068 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f8f8b0b4286e39d58edfc3cbc98e5068 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_08610a960b5be1fcc512e7cc162ab261 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_08610a960b5be1fcc512e7cc162ab261 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_08610a960b5be1fcc512e7cc162ab261 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_08610a960b5be1fcc512e7cc162ab261 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_d55575b608eca13fc497e751c17fe929 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_d55575b608eca13fc497e751c17fe929 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_dc2599f54bb1d831d2a4ae36face2465 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_dc2599f54bb1d831d2a4ae36face2465 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_dc2599f54bb1d831d2a4ae36face2465 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_dc2599f54bb1d831d2a4ae36face2465 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_6df3af7e638ddbff36a9d235b17341f6 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_6df3af7e638ddbff36a9d235b17341f6 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a0e36f9700cc6b41d81ba6d86be1d55d | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a0e36f9700cc6b41d81ba6d86be1d55d | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_ceadc6bcda9c2bbb94cbfccf60a730f1 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_ceadc6bcda9c2bbb94cbfccf60a730f1 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_024c8bd7627ea5f42a82488b3b42d8a7 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_024c8bd7627ea5f42a82488b3b42d8a7 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_206907f11468cf856d49ec50b6bb9dce | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_206907f11468cf856d49ec50b6bb9dce | p1@Msmp |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_206907f11468cf856d49ec50b6bb9dce | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_206907f11468cf856d49ec50b6bb9dce | p1@Msmp |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_07a329e30bfc6742817b4724426605dd | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_07a329e30bfc6742817b4724426605dd | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_07a329e30bfc6742817b4724426605dd | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_07a329e30bfc6742817b4724426605dd | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_79a30a53bce45de697a90ce8298dbc92 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_79a30a53bce45de697a90ce8298dbc92 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_0c3860a657826b4f9d5bf2e541c80ea5 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_0c3860a657826b4f9d5bf2e541c80ea5 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_cf2de1bf7fafa63d150a5a3975b638f2 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_cf2de1bf7fafa63d150a5a3975b638f2 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_cbe2f7cfa4eb3a770287466a0f7a7d8a | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_cbe2f7cfa4eb3a770287466a0f7a7d8a | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_1c4bd77533c21f33b3b584305398e458 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_1c4bd77533c21f33b3b584305398e458 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_d97cb70517e5129057bc2a32ae956fdc | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_d97cb70517e5129057bc2a32ae956fdc | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_20393f3b8f9d7f9cf293287f1711652f | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_20393f3b8f9d7f9cf293287f1711652f | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_20393f3b8f9d7f9cf293287f1711652f | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_20393f3b8f9d7f9cf293287f1711652f | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_ccc7b634afce069054c2107feb68c0f8 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_ccc7b634afce069054c2107feb68c0f8 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_d063f388351845011bb5d36d8d3b8d5e | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_d063f388351845011bb5d36d8d3b8d5e | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_85c154e8444a70aaed249f21667dcc65 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_85c154e8444a70aaed249f21667dcc65 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_85c154e8444a70aaed249f21667dcc65 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_85c154e8444a70aaed249f21667dcc65 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_fe4c791663e65de3a91027b3dbdf95b3 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_fe4c791663e65de3a91027b3dbdf95b3 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_fe4c791663e65de3a91027b3dbdf95b3 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_fe4c791663e65de3a91027b3dbdf95b3 | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_9c224f00c2f120ff9eabdce370671868 | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_9c224f00c2f120ff9eabdce370671868 | p2@Siglec15 |
