UBERON:0004225: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=respiratory system smooth muscle | |name=respiratory system smooth muscle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001004 | |part_of=UBERON:0001004 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | respiratory system smooth muscle | ||
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| Namespace: | FANTOM | ||
| Definition: | "A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic] | ||
| Xrefs: |
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| Synonyms: |
"apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic] "apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic] "apparatus respiratorius smooth muscle" EXACT [OBOL:automatic] "apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic] "involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic] "involuntary muscle of respiratory system" EXACT [OBOL:automatic] "non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic] "non-striated muscle of respiratory system" EXACT [OBOL:automatic] "respiratory system involuntary muscle" EXACT [OBOL:automatic] "respiratory system non-striated muscle" EXACT [OBOL:automatic] "respiratory system smooth muscle tissue" EXACT [OBOL:automatic] "smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic] "smooth muscle of respiratory system" EXACT [OBOL:automatic] "smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic] "smooth muscle tissue of respiratory system" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001135(smooth muscle tissue) |
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| part_of: | UBERON:0001004(respiratory system) |
Children
| is a: | FF:11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1),FF:11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2),FF:11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3),FF:11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4),FF:11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5),FF:11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6),FF:11966-126D4 (Smooth muscle cells - airway, control, donor1),FF:11967-126D5 (Smooth muscle cells - airway, control, donor2),FF:11968-126D6 (Smooth muscle cells - airway, control, donor3),FF:11969-126D7 (Smooth muscle cells - airway, control, donor4) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1)
- 11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2)
- 11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3)
- 11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4)
- 11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5)
- 11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6)
- 11966-126D4 (Smooth muscle cells - airway, control, donor1)
- 11967-126D5 (Smooth muscle cells - airway, control, donor2)
- 11968-126D6 (Smooth muscle cells - airway, control, donor3)
- 11969-126D7 (Smooth muscle cells - airway, control, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004225 (respiratory system smooth muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
