UBERON:0004061: Difference between revisions
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|located_in= | |located_in= | ||
|name=neural tube mantle layer | |name=neural tube mantle layer | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0001049 | |part_of=UBERON:0000922;;UBERON:0001049 | ||
Latest revision as of 17:42, 12 September 2014
| Name: | neural tube mantle layer | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690] | ||
| Xrefs: |
| ||
| Synonyms: | "neural tube intermediate zone" EXACT [MP:0009690] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000119(cell layer),UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| part_of: | UBERON:0000922(embryo),UBERON:0001049(neural tube) |
Children
| part of: | UBERON:0005882 (neural tube alar plate) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004061 (neural tube mantle layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3c | p@chr1:158200818..158200829, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3c | p@chr1:158200818..158200829, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8 | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8 | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8 | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8 | p@chr15:22719411..22719436, + |
| 3.06e-23 | FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846 | p@chr2:127098489..127098493, - |
| 3.06e-23 | FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846 | p@chr2:127098489..127098493, - |
| 5.07e-23 | FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439a | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439a | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439a | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439a | p@chr2:158208771..158208772, + |
| 8.39e-23 | FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9 | p1@ENSMUST00000157206 |
| 8.39e-23 | FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9 | p1@ENSMUST00000157206 |
| 1.39e-22 | FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049e | p7@Adipor2 |
| 1.39e-22 | FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049e | p7@Adipor2 |
| 5.15e-19 | FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcf | p@chr14:52528327..52528336, - |
| 5.15e-19 | FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcf | p@chr14:52528327..52528336, - |
| 7.74e-19 | FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bb | p@chr19:32177340..32177351, - |
| 7.74e-19 | FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bb | p@chr19:32177340..32177351, - |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887f | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887f | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887f | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887f | p@chr4:98216369..98216408, + |
| 1.74e-18 | FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799e | p@chr8:123151369..123151375, + |
| 1.74e-18 | FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799e | p@chr8:123151369..123151375, + |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1 | p3@Prmt7 |
| 6.79e-16 | FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92c | p@chr1:101686777..101686780, + |
| 6.79e-16 | FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92c | p@chr1:101686777..101686780, + |
| 9.51e-16 | FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3d | p6@Ptprr |
| 9.51e-16 | FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3d | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3d | p6@Ptprr |
| 9.51e-16 | FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3d | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3d | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3d | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3d | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3d | p@chr17:69476739..69476749, + |
| 1.33e-15 | FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07 | p19@Gas7 |
| 1.33e-15 | FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07 | p19@Gas7 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422 | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422 | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422 | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422 | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422 | p@chr11:55886412..55886420, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250 | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250 | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250 | p63@Tcf7l2 |
| 3.62e-14 | FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250 | p63@Tcf7l2 |
| 4.85e-14 | FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605 | p@chr14:93478934..93478944, - |
| 4.85e-14 | FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605 | p@chr14:93478934..93478944, - |
| 6.5e-14 | FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aad | p2@Ghrh |
| 6.5e-14 | FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aad | p2@Ghrh |
| 8.69e-14 | FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83 | p@chr10:19891807..19891818, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfb | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfb | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfb | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfb | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfb | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfb | p@chr9:103085667..103085678, + |
| 1.55e-13 | FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32 | p6@Skp1a |
| 1.55e-13 | FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32 | p6@Skp1a |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5 | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5 | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5 | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5 | p@chr10:31110259..31110265, - |
| 1.2e-12 | FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5eb | p3@Rgs17 |
| 1.2e-12 | FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5eb | p3@Rgs17 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463e | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463e | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463e | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463e | p14@Fbxo7 |
