Personal tools

UBERON:0004061: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004061
|alt_id=
|name=neural tube mantle layer
|namespace=
|def="the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
|xref=EMAPA:17148
|is_a=UBERON:0000119;;UBERON:0004121;;UBERON:0005291
|synonym="neural tube intermediate zone" EXACT [MP:0009690]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004061
|is_a=UBERON:0000119 ;;UBERON:0004121 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=neural tube mantle layer
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001049
|part_of=UBERON:0000922;;UBERON:0001049
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="neural tube intermediate zone" EXACT [MP:0009690]
|union_of=
|xref=EMAPA:17148
}}
}}

Latest revision as of 17:42, 12 September 2014

Name:neural tube mantle layer
Namespace:FANTOM
Definition:"the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
Xrefs:
links:
EMAPA:17148
Synonyms: "neural tube intermediate zone" EXACT [MP:0009690]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000119(cell layer),UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0000922(embryo),UBERON:0001049(neural tube)



Children

part of:UBERON:0005882 (neural tube alar plate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004061 (neural tube mantle layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3cp@chr1:158200818..158200829, -
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3cp@chr1:158200818..158200829, -
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8p19@Rgs8
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8p@chr15:22719411..22719436, +
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439ap@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439ap@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439ap@chr16:96721083..96721092, +
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439ap@chr2:158208771..158208772, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9p1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9p1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049ep7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049ep7@Adipor2
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcfp@chr14:52528327..52528336, -
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcfp@chr14:52528327..52528336, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bbp@chr19:32177340..32177351, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bbp@chr19:32177340..32177351, -
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:98216369..98216408, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799ep@chr8:123151369..123151375, +
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799ep@chr8:123151369..123151375, +
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1p3@Prmt7
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92cp@chr1:101686777..101686780, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92cp@chr1:101686777..101686780, +
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3dp6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3dp9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3dp6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3dp3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3dp9@Clasp2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3dp@chr17:69476739..69476749, +
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3dp3@Ninj2
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3dp@chr17:69476739..69476749, +
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07p19@Gas7
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07p19@Gas7
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr11:55886412..55886420, +
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422p1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422p15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr14:33139881..33139891, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422p1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422p15@Ccdc92
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250p63@Tcf7l2
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250p63@Tcf7l2
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aadp2@Ghrh
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aadp2@Ghrh
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83p8@St18
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83p@chr10:19891807..19891818, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfbp@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfbp@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfbp9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfbp@chr2:163149068..163149077, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfbp9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfbp@chr9:103085667..103085678, +
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32p6@Skp1a
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32p6@Skp1a
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5p@chr4:43519210..43519232, +
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5ebp3@Rgs17
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5ebp3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463ep14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463ep1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463ep14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463ep1@ENSMUST00000124586

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004061&oldid=3277614"