UBERON:0004054: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|anatomical_img_id=FMA:45655 | |||
| | |||
|comment=Editor note: consider splitting genitalia from genital organ | |comment=Editor note: consider splitting genitalia from genital organ | ||
|created_by= | |created_by= | ||
| | |def="the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004054 | |||
|is_a=UBERON:0003135 ;;UBERON:0004175 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=internal male genitalia | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000079 | |part_of=UBERON:0000079 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=organ_slim | ||
| | |synonym="internal male genital organ" EXACT [BTO:0003096];;"male internal genitalia" EXACT [FMA:45655];;"organa genitalia masculina interna" RELATED [BTO:0003096] | ||
|union_of= | |||
|xref=BTO:0003096;;FMA:45655;;SCTID:310536002 | |||
}} | }} | ||
Latest revision as of 17:42, 12 September 2014
| Name: | internal male genitalia | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205] | ||
| Xrefs: |
| ||
| Synonyms: |
"internal male genital organ" EXACT [BTO:0003096] "male internal genitalia" EXACT [FMA:45655] "organa genitalia masculina interna" RELATED [BTO:0003096] | ||
| Comments: | Editor note: consider splitting genitalia from genital organ | ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003135(male reproductive organ),UBERON:0004175(internal genitalia) |
|---|---|
| part_of: | UBERON:0000079(male reproductive system) |
Children
| part of: | UBERON:0005352 (spermatic cord),UBERON:0006947 (male genital duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004054 (internal male genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4 | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4 | p1@LCN9 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617636..125617646, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617636..125617646, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4 | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4 | p3@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4 | p3@PATE2 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE1 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE1 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4 | p2@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4 | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4 | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4 | p2@EDDM3A |
| 2.79e-195 | FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4 | p1@LCN9 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4 | p@chr10:114094924..114094935, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4 | p1@EDDM3A |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4 | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4 | p9@TSC2 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:92922903..92922918, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4 | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4 | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:92922903..92922918, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4 | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4 | p1@EDDM3A |
| 3.27e-147 | FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4 | p9@TSC2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4 | p@chr10:114094924..114094935, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832 | p8@SNX1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr17:59475447..59475455, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832 | p11@ANO1 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832 | p8@SNX1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832 | p11@ANO1 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr17:59475447..59475455, + |
| 8.93e-147 | FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7e | p@chr2:87985242..87985251, - |
| 8.93e-147 | FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7e | p9@PAX2 |
| 8.93e-147 | FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7e | p9@PAX2 |
| 8.93e-147 | FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7e | p@chr2:87985242..87985251, - |
| 1.47e-146 | FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8d | p@chr3:107201385..107201388, - |
| 1.47e-146 | FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8d | p@chr3:107201385..107201388, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:13186643..13186668,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:13186643..13186668, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851992..43851993,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851992..43851993, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:219942197..219942226,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr2:219942197..219942226, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836544..43836571, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:125703090..125703100,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr11:125703090..125703100, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr22:32000571..32000593,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p12@SFI1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr10:102502483..102502493,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr10:102502483..102502493, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43838296..43838299,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43838296..43838299, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr16:72173239..72173251,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr16:72173239..72173251, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43850418..43850438,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43850418..43850438, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr6:70856430..70856440,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr6:70856430..70856440, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43851184..43851194,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851184..43851194, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:175288705..175288713,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p28@CPLX2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr12:126515178..126515204, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:102505901..102505907,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p13@PAX2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851679..43851707,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851679..43851707, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836329..43836334, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43852924..43852944,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43852924..43852944, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43837196..43837202,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43837196..43837202, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:25179461..25179463,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr1:25179461..25179463, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15739153..15739175,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15739153..15739175, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43850865..43850873,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43850865..43850873, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43835380..43835384,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p2@SEMG1, p3@SEMG2 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:179511281..179511283,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr5:179511281..179511283, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr2:223648293..223648295, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:138128..138140,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p2@DEFB127 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:15739153..15739175,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15739153..15739175, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851326..43851348,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851326..43851348, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836162..43836169,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836162..43836169, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43851747..43851752,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851747..43851752, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr14:68644730..68644737, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43836755..43836769,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836755..43836769, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr9:132204351..132204358,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr9:132204351..132204358, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr14:21059506..21059525,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr14:21059506..21059525, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr3:49149230..49149264,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr3:49149230..49149264, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43837102..43837114,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43837102..43837114, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15731181..15731184,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15731181..15731184, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:119590749..119590754,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr10:119590749..119590754, - |
