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{{UBERON
{{UBERON
|id=UBERON:0003703
|alt_id=
|name=extrahepatic bile duct
|namespace=
|def="the passages external to the liver for the conveyance of bile." [MP:0009498]
|xref=FMA:14678;;GAID:281;;MA:0002659;;MESH:A.03.159.183.079;;ncithesaurus:Extrahepatic_Bile_Duct;;SCTID:276158002
|is_a=UBERON:0002394
|synonym="bile duct extrahepatic part" RELATED [MA:0002659];;"extrahepatic biliary system" RELATED [GAID:281]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the passages external to the liver for the conveyance of bile." [MP:0009498]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003703
|is_a=UBERON:0002394
|is_obsolete=
|located_in=
|located_in=
|name=extrahepatic bile duct
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002107
|subset=vertebrate_core
|synonym="bile duct extrahepatic part" RELATED [MA:0002659];;"extrahepatic biliary system" RELATED [GAID:281]
|union_of=
|xref=FMA:14678;;GAID:281;;MA:0002659;;MESH:A.03.159.183.079;;ncithesaurus:Extrahepatic_Bile_Duct;;SCTID:276158002
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:extrahepatic bile duct
Namespace:FANTOM
Definition:"the passages external to the liver for the conveyance of bile." [MP:0009498]
Xrefs:
links:

FMA:14678
GAID:281
MA:0002659
MESH:A.03.159.183.079
ncithesaurus:Extrahepatic_Bile_Duct

SCTID:276158002
Synonyms: "bile duct extrahepatic part" RELATED [MA:0002659]
"extrahepatic biliary system" RELATED [GAID:281]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002394(bile duct)



Children

is a:UBERON:0001174 (common bile duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003703 (extrahepatic bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_a098cdc2924682874b59bfe8e62ded0ep@chr7:98796685..98796688, -
5.42e-195FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_a098cdc2924682874b59bfe8e62ded0ep@chr19:15923954..15923958, -
5.42e-195FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_a098cdc2924682874b59bfe8e62ded0ep@chr7:98796685..98796688, -
5.42e-195FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_a098cdc2924682874b59bfe8e62ded0ep15@STAG3
5.42e-195FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_a098cdc2924682874b59bfe8e62ded0ep@chr19:15923954..15923958, -
5.42e-195FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_a098cdc2924682874b59bfe8e62ded0ep15@STAG3
5.42e-195FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_a098cdc2924682874b59bfe8e62ded0ep@chr19:49545691..49545692, +
5.42e-195FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_a098cdc2924682874b59bfe8e62ded0ep@chr19:49545691..49545692, +
5.42e-195FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_a098cdc2924682874b59bfe8e62ded0ep@chr15:20093569..20093572, +
5.42e-195FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_a098cdc2924682874b59bfe8e62ded0ep@chr7:98807901..98807908, -
5.42e-195FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_a098cdc2924682874b59bfe8e62ded0ep@chr15:20093569..20093572, +
5.42e-195FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_a098cdc2924682874b59bfe8e62ded0ep@chr7:98807901..98807908, -
9.37e-99FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_c0aceda25608ad2f38c0fe4de50a7588p@chr19:49545646..49545652, +
9.37e-99FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_c0aceda25608ad2f38c0fe4de50a7588p@chr7:98595103..98595105, -
9.37e-99FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_c0aceda25608ad2f38c0fe4de50a7588p@chr7:98595103..98595105, -
9.37e-99FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_c0aceda25608ad2f38c0fe4de50a7588p@chr3:139035972..139036016, -
9.37e-99FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_c0aceda25608ad2f38c0fe4de50a7588p@chr19:49545646..49545652, +
9.37e-99FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_c0aceda25608ad2f38c0fe4de50a7588p@chr3:139035972..139036016, -
2.55e-98FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_7ef2d81038af2048d85b5f1ce872e9f8p8@MYH16
2.55e-98FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_7ef2d81038af2048d85b5f1ce872e9f8p@chr20:61339609..61339610, +
2.55e-98FFCP PHASE1:Hg19::chr11:69867159..69867175,-#_7ef2d81038af2048d85b5f1ce872e9f8p3@ENST00000528507
2.55e-98FFCP PHASE2:Hg19::chr7:98870980..98870981,+#_7ef2d81038af2048d85b5f1ce872e9f8p8@MYH16
2.55e-98FFCP PHASE2:Hg19::chr2:40184895..40184905,-#_7ef2d81038af2048d85b5f1ce872e9f8p@chr2:40184895..40184905, -
2.55e-98FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_7ef2d81038af2048d85b5f1ce872e9f8p@chr2:40184895..40184905, -
2.55e-98FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_7ef2d81038af2048d85b5f1ce872e9f8p3@ENST00000528507
2.55e-98FFCP PHASE1:Hg19::chr7:98870790..98870795,+#_7ef2d81038af2048d85b5f1ce872e9f8p7@MYH16
2.55e-98FFCP PHASE2:Hg19::chr7:98870790..98870795,+#_7ef2d81038af2048d85b5f1ce872e9f8p7@MYH16
2.55e-98FFCP PHASE1:Hg19::chr13:23368290..23368299,+#_7ef2d81038af2048d85b5f1ce872e9f8p@chr13:23368290..23368299, +
2.55e-98FFCP PHASE2:Hg19::chr7:150037547..150037552,-#_7ef2d81038af2048d85b5f1ce872e9f8p10@RARRES2
2.55e-98FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_7ef2d81038af2048d85b5f1ce872e9f8p@chr22:30653778..30653783, -
2.55e-98FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_7ef2d81038af2048d85b5f1ce872e9f8p10@RARRES2
2.55e-98FFCP PHASE1:Hg19::chr20:61339609..61339610,+#_7ef2d81038af2048d85b5f1ce872e9f8p@chr20:61339609..61339610, +
2.55e-98FFCP PHASE2:Hg19::chr13:23368290..23368299,+#_7ef2d81038af2048d85b5f1ce872e9f8p@chr13:23368290..23368299, +
2.55e-98FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_7ef2d81038af2048d85b5f1ce872e9f8p@chr22:30653778..30653783, -
1.23e-66FFCP PHASE2:Hg19::chr19:51462404..51462413,-#_8eb07627df64b75029751f3383172d8ap@chr19:51462404..51462413, -
1.23e-66FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_8eb07627df64b75029751f3383172d8ap@chr6:1054763..1054800, -
1.23e-66FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_8eb07627df64b75029751f3383172d8ap@chr6:1054763..1054800, -
1.23e-66FFCP PHASE1:Hg19::chr19:49545674..49545685,+#_8eb07627df64b75029751f3383172d8ap@chr19:49545674..49545685, +
1.23e-66FFCP PHASE2:Hg19::chr19:49545674..49545685,+#_8eb07627df64b75029751f3383172d8ap@chr19:49545674..49545685, +
1.23e-66FFCP PHASE1:Hg19::chr4:143369478..143369483,-#_8eb07627df64b75029751f3383172d8ap@chr4:143369478..143369483, -
1.23e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_8eb07627df64b75029751f3383172d8ap@chr13:107026326..107026335, -
1.23e-66FFCP PHASE2:Hg19::chr4:143369478..143369483,-#_8eb07627df64b75029751f3383172d8ap@chr4:143369478..143369483, -
1.23e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_8eb07627df64b75029751f3383172d8ap@chr13:107026326..107026335, -
1.23e-66FFCP PHASE1:Hg19::chr19:51462404..51462413,-#_8eb07627df64b75029751f3383172d8ap@chr19:51462404..51462413, -
2.39e-66FFCP PHASE2:Hg19::chr3:170626681..170626687,+#_d490dbc54e5bb9ecaca328f4a59dbfedp@chr3:170626681..170626687, +
2.39e-66FFCP PHASE1:Hg19::chr7:98870435..98870449,+#_d490dbc54e5bb9ecaca328f4a59dbfedp6@MYH16
2.39e-66FFCP PHASE2:Hg19::chr7:98870435..98870449,+#_d490dbc54e5bb9ecaca328f4a59dbfedp6@MYH16
2.39e-66FFCP PHASE1:Hg19::chr3:170626681..170626687,+#_d490dbc54e5bb9ecaca328f4a59dbfedp@chr3:170626681..170626687, +
4.66e-66FFCP PHASE1:Hg19::chr20:56234717..56234758,-#_03f5353bb40942df8e5c2ddd289b8a69p@chr20:56234717..56234758, -
4.66e-66FFCP PHASE2:Hg19::chr20:56234717..56234758,-#_03f5353bb40942df8e5c2ddd289b8a69p@chr20:56234717..56234758, -
4.66e-66FFCP PHASE2:Hg19::chr10:114885594..114885600,+#_03f5353bb40942df8e5c2ddd289b8a69p@chr10:114885594..114885600, +
4.66e-66FFCP PHASE1:Hg19::chr10:114885594..114885600,+#_03f5353bb40942df8e5c2ddd289b8a69p@chr10:114885594..114885600, +
1.46e-50FFCP PHASE1:Hg19::chr17:70636802..70636818,+#_a5729199e468281f43f71c21af6b7f71p@chr17:70636802..70636818, +
1.46e-50FFCP PHASE2:Hg19::chr17:70636802..70636818,+#_a5729199e468281f43f71c21af6b7f71p@chr17:70636802..70636818, +
1.46e-50FFCP PHASE1:Hg19::chr19:51471381..51471383,-#_a5729199e468281f43f71c21af6b7f71p14@KLK6
1.46e-50FFCP PHASE1:Hg19::chr7:98740685..98740699,-#_a5729199e468281f43f71c21af6b7f71p@chr7:98740685..98740699, -
1.46e-50FFCP PHASE2:Hg19::chr19:51471381..51471383,-#_a5729199e468281f43f71c21af6b7f71p14@KLK6
1.46e-50FFCP PHASE2:Hg19::chr7:98740685..98740699,-#_a5729199e468281f43f71c21af6b7f71p@chr7:98740685..98740699, -
2.42e-50FFCP PHASE2:Hg19::chr6:128815342..128815347,-#_5f8d5931be1e691ce8c49cb53f8ac968p@chr6:128815342..128815347, -
2.42e-50FFCP PHASE1:Hg19::chr6:128815342..128815347,-#_5f8d5931be1e691ce8c49cb53f8ac968p@chr6:128815342..128815347, -
2.42e-50FFCP PHASE2:Hg19::chr10:5501962..5501964,+#_5f8d5931be1e691ce8c49cb53f8ac968p@chr10:5501962..5501964, +
2.42e-50FFCP PHASE1:Hg19::chr10:5501962..5501964,+#_5f8d5931be1e691ce8c49cb53f8ac968p@chr10:5501962..5501964, +
2.42e-50FFCP PHASE2:Hg19::chr15:42186162..42186197,-#_5f8d5931be1e691ce8c49cb53f8ac968p1@SPTBN5
2.42e-50FFCP PHASE1:Hg19::chr15:42186162..42186197,-#_5f8d5931be1e691ce8c49cb53f8ac968p1@SPTBN5
2.42e-50FFCP PHASE1:Hg19::chr7:98870934..98870947,+#_5f8d5931be1e691ce8c49cb53f8ac968p4@MYH16
2.42e-50FFCP PHASE1:Hg19::chr22:43343242..43343291,-#_5f8d5931be1e691ce8c49cb53f8ac968p20@PACSIN2
2.42e-50FFCP PHASE2:Hg19::chr7:98870934..98870947,+#_5f8d5931be1e691ce8c49cb53f8ac968p4@MYH16
2.42e-50FFCP PHASE2:Hg19::chr10:5652876..5652885,-#_5f8d5931be1e691ce8c49cb53f8ac968p5@ENST00000425246
2.42e-50FFCP PHASE1:Hg19::chr10:5652876..5652885,-#_5f8d5931be1e691ce8c49cb53f8ac968p5@ENST00000425246
2.42e-50FFCP PHASE1:Hg19::chr7:98870948..98870967,+#_5f8d5931be1e691ce8c49cb53f8ac968p3@MYH16
2.42e-50FFCP PHASE2:Hg19::chr22:43343242..43343291,-#_5f8d5931be1e691ce8c49cb53f8ac968p20@PACSIN2
2.42e-50FFCP PHASE2:Hg19::chr7:98870948..98870967,+#_5f8d5931be1e691ce8c49cb53f8ac968p3@MYH16
6.58e-50FFCP PHASE1:Hg19::chr10:101691084..101691100,-#_abcb3f677b707dd7050c9508f5f5ff3bp8@DNMBP
6.58e-50FFCP PHASE2:Hg19::chr1:46954560..46954569,+#_abcb3f677b707dd7050c9508f5f5ff3bp@chr1:46954560..46954569, +
6.58e-50FFCP PHASE1:Hg19::chr1:46954560..46954569,+#_abcb3f677b707dd7050c9508f5f5ff3bp@chr1:46954560..46954569, +
6.58e-50FFCP PHASE2:Hg19::chr10:101691118..101691135,-#_abcb3f677b707dd7050c9508f5f5ff3bp6@DNMBP
6.58e-50FFCP PHASE1:Hg19::chr10:101691118..101691135,-#_abcb3f677b707dd7050c9508f5f5ff3bp6@DNMBP
6.58e-50FFCP PHASE2:Hg19::chr19:51523347..51523358,-#_abcb3f677b707dd7050c9508f5f5ff3bp11@KLK10
6.58e-50FFCP PHASE1:Hg19::chr19:51523347..51523358,-#_abcb3f677b707dd7050c9508f5f5ff3bp11@KLK10
6.58e-50FFCP PHASE1:Hg19::chr8:139755835..139755842,-#_abcb3f677b707dd7050c9508f5f5ff3bp@chr8:139755835..139755842, -
6.58e-50FFCP PHASE2:Hg19::chr8:139755835..139755842,-#_abcb3f677b707dd7050c9508f5f5ff3bp@chr8:139755835..139755842, -
6.58e-50FFCP PHASE2:Hg19::chr10:101691084..101691100,-#_abcb3f677b707dd7050c9508f5f5ff3bp8@DNMBP
6.62e-41FFCP PHASE1:Hg19::chr10:5652892..5652903,-#_6326a64d223aac8035eb2ac2b3ab1551p2@ENST00000425246
6.62e-41FFCP PHASE1:Hg19::chr9:132337391..132337396,+#_6326a64d223aac8035eb2ac2b3ab1551p2@ENST00000443993, p2@uc004bya.1
6.62e-41FFCP PHASE2:Hg19::chr3:139253550..139253585,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr3:139253550..139253585, +
6.62e-41FFCP PHASE1:Hg19::chr3:98671855..98671858,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr3:98671855..98671858, +
6.62e-41FFCP PHASE1:Hg19::chr3:139253550..139253585,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr3:139253550..139253585, +
6.62e-41FFCP PHASE2:Hg19::chr17:47091824..47091833,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr17:47091824..47091833, +
6.62e-41FFCP PHASE1:Hg19::chr17:47091824..47091833,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr17:47091824..47091833, +
6.62e-41FFCP PHASE2:Hg19::chr3:98671855..98671858,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr3:98671855..98671858, +
6.62e-41FFCP PHASE1:Hg19::chr7:98805698..98805708,-#_6326a64d223aac8035eb2ac2b3ab1551p@chr7:98805698..98805708, -
6.62e-41FFCP PHASE2:Hg19::chr7:98805698..98805708,-#_6326a64d223aac8035eb2ac2b3ab1551p@chr7:98805698..98805708, -
6.62e-41FFCP PHASE2:Hg19::chr2:30440814..30440823,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr2:30440814..30440823, +
6.62e-41FFCP PHASE1:Hg19::chr2:30440814..30440823,+#_6326a64d223aac8035eb2ac2b3ab1551p@chr2:30440814..30440823, +
6.62e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_6326a64d223aac8035eb2ac2b3ab1551p@chr10:30046722..30046725, -
6.62e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_6326a64d223aac8035eb2ac2b3ab1551p@chr10:30046722..30046725, -
6.62e-41FFCP PHASE2:Hg19::chr9:132337391..132337396,+#_6326a64d223aac8035eb2ac2b3ab1551p2@ENST00000443993, p2@uc004bya.1
6.62e-41FFCP PHASE2:Hg19::chr10:5652892..5652903,-#_6326a64d223aac8035eb2ac2b3ab1551p2@ENST00000425246
9.91e-41FFCP PHASE1:Hg19::chr8:143317560..143317581,-#_7a762aad9e38728688329e08020585afp@chr8:143317560..143317581, -
9.91e-41FFCP PHASE2:Hg19::chr8:143317560..143317581,-#_7a762aad9e38728688329e08020585afp@chr8:143317560..143317581, -

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