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{{UBERON
{{UBERON
|id=UBERON:0003606
|alt_id=
|name=limb long bone
|namespace=
|def="A long bone that is part of a limb [Obol]." [OBOL:automatic]
|xref=MA:0000298
|is_a=UBERON:0002428;;UBERON:0002495
|synonym="long bone of limb" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A long bone that is part of a limb [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003606
|is_a=UBERON:0002428 ;;UBERON:0002495
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=limb long bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="long bone of limb" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000298
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:limb long bone
Namespace:FANTOM
Definition:"A long bone that is part of a limb [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000298
Synonyms: "long bone of limb" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002428(limb bone),UBERON:0002495(long bone)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0003608 (hindlimb long bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003606 (limb long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_95fba1a372a1184209fc33d7e0a910a0p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_95fba1a372a1184209fc33d7e0a910a0p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_65c1526a2db860d2cb45d68b76eb6584p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_65c1526a2db860d2cb45d68b76eb6584p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_65c1526a2db860d2cb45d68b76eb6584p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_65c1526a2db860d2cb45d68b76eb6584p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_65c1526a2db860d2cb45d68b76eb6584p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_65c1526a2db860d2cb45d68b76eb6584p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_816edfa3c1fd740984ed4c7abb8d42e3p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_816edfa3c1fd740984ed4c7abb8d42e3p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_579ff7cb093cb2d97c321cd7c0de0e42p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_579ff7cb093cb2d97c321cd7c0de0e42p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_1d5c3fe6b6949f389fa4e46356a842fbp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_1d5c3fe6b6949f389fa4e46356a842fbp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_1d5c3fe6b6949f389fa4e46356a842fbp@chr11:67063327..67063335, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_ca94281070596caa3691b31fdced0664p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_ca94281070596caa3691b31fdced0664p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_53e7d38678b7013c145fb5baff5e83f6p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_53e7d38678b7013c145fb5baff5e83f6p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_800bbdb8d8c8766235941231765d9cd2p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_800bbdb8d8c8766235941231765d9cd2p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_bef6f579c17929aeb3919e5e032c1687p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_bef6f579c17929aeb3919e5e032c1687p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_fd08c6f37563c081a9e93047c7cdff90p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_fd08c6f37563c081a9e93047c7cdff90p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_1382748c41d5ef1c834752f05dcf23acp2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_1382748c41d5ef1c834752f05dcf23acp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_50d3d59334cc071dc4dde3d0d0897a27p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_50d3d59334cc071dc4dde3d0d0897a27p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_30ad0d0d9afec0a6027350bb7875830ep2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_30ad0d0d9afec0a6027350bb7875830ep@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_30ad0d0d9afec0a6027350bb7875830ep2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_30ad0d0d9afec0a6027350bb7875830ep@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_5545042acfeb6ba7ae39827e58a5bbf8p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_5545042acfeb6ba7ae39827e58a5bbf8p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_5545042acfeb6ba7ae39827e58a5bbf8p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_5545042acfeb6ba7ae39827e58a5bbf8p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_eabb4430912ca78b6648d5184cfc7d1ep6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_eabb4430912ca78b6648d5184cfc7d1ep6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_af8f598e92d30d862a9bf4c2012e8744p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_af8f598e92d30d862a9bf4c2012e8744p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_af8f598e92d30d862a9bf4c2012e8744p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_af8f598e92d30d862a9bf4c2012e8744p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_5d971ed9854a736d712c0f90241c024bp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_5d971ed9854a736d712c0f90241c024bp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_d5bf0ef3203efe106083cdb462e87201p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_d5bf0ef3203efe106083cdb462e87201p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_d5bf0ef3203efe106083cdb462e87201p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_d5bf0ef3203efe106083cdb462e87201p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_f86ba3e87ece002af2ddce004e300753p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_f86ba3e87ece002af2ddce004e300753p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_74492865896b34fcf139e4a622f7dc70p2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_74492865896b34fcf139e4a622f7dc70p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_c89b92974ab84d4a09662d787116c636p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_c89b92974ab84d4a09662d787116c636p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_2745617f81bf5b2f51f34b96c28d6b90p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_2745617f81bf5b2f51f34b96c28d6b90p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_f03e3a12e59e6fe63943926b321477b2p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_f03e3a12e59e6fe63943926b321477b2p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_f03e3a12e59e6fe63943926b321477b2p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_f03e3a12e59e6fe63943926b321477b2p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_8bf1fddfc8b778a5836447a911f64acap@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_8bf1fddfc8b778a5836447a911f64acap@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_8bf1fddfc8b778a5836447a911f64acap@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_8bf1fddfc8b778a5836447a911f64acap@chr6:90552017..90552024, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_1972ffe5c41d8952c4da69b96771382cp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_1972ffe5c41d8952c4da69b96771382cp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_804a8ca02c2178d756ca77653833c234p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_804a8ca02c2178d756ca77653833c234p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_da9bb9ffe795290695ca5484d5d7238ap@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_da9bb9ffe795290695ca5484d5d7238ap@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_a801b079e6fc84a09597fd8b4cddbbdap1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_a801b079e6fc84a09597fd8b4cddbbdap1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_e77f30747044118e1a60321b4a28f091p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_e77f30747044118e1a60321b4a28f091p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_5ce83267820838f5a8f57515bb5f9112p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_5ce83267820838f5a8f57515bb5f9112p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3ad3c71efe2d84fadee9adf459b73c42p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3ad3c71efe2d84fadee9adf459b73c42p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3ad3c71efe2d84fadee9adf459b73c42p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3ad3c71efe2d84fadee9adf459b73c42p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_da2075ae33989983a2d4b3ceb8695d63p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_da2075ae33989983a2d4b3ceb8695d63p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_19b25864f8540aa1498197618aa42e46p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_19b25864f8540aa1498197618aa42e46p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_abf40ebf994af69bc89c87f7c70826c8p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_abf40ebf994af69bc89c87f7c70826c8p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_abf40ebf994af69bc89c87f7c70826c8p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_abf40ebf994af69bc89c87f7c70826c8p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_80ccc92f73e7afc4634207f6f203b371p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_80ccc92f73e7afc4634207f6f203b371p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_80ccc92f73e7afc4634207f6f203b371p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_80ccc92f73e7afc4634207f6f203b371p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_cef35f9bed3a69601080eeac4d7ee718p2@Siglec15
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_cef35f9bed3a69601080eeac4d7ee718p@chr2:180890942..180890956, -

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