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{{UBERON
{{UBERON
|id=UBERON:0003422
|alt_id=
|name=mesenchyme of umbilical cord
|namespace=
|def="a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
|xref=EMAPA:26127;;SCTID:368069009
|is_a=UBERON:0003104
|synonym="umbilical cord mesenchyme" EXACT [OBOL:automatic];;"Wharton's jelly" EXACT [EMAPA:26127]
|comment=todo - check
|comment=todo - check
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003422
|is_a=UBERON:0003104 ;;UBERON:0004120 ;;UBERON:0005292
|is_obsolete=
|located_in=
|located_in=
|name=mesenchyme of umbilical cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002331
|part_of=UBERON:0002331
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="umbilical cord mesenchyme" EXACT [OBOL:automatic];;"Wharton's jelly" EXACT [EMAPA:26127]
|union_of=
|xref=EMAPA:26127;;SCTID:368069009
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:mesenchyme of umbilical cord
Namespace:FANTOM
Definition:"a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
Xrefs:
links:

EMAPA:26127

SCTID:368069009
Synonyms: "umbilical cord mesenchyme" EXACT [OBOL:automatic]
"Wharton's jelly" EXACT [EMAPA:26127]
Comments:todo - check

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue)
part_of:UBERON:0002331(umbilical cord)



Children

part of:CL:0002569 (mesenchymal stem cell of umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.96e-60FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0p@chr3:162256416..162256425, -
9.96e-60FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0p@chr3:162256416..162256425, -
5.62e-43FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5p29@MME
5.62e-43FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5p29@MME
4.27e-34FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882p@chr6:11354777..11354778, +
4.27e-34FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882p@chr6:11354777..11354778, +
1.67e-25FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117p@chr17:47039342..47039353, -
1.67e-25FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117p@chr17:47039342..47039353, -
6.78e-23FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977p@chr15:68805200..68805208, +
6.78e-23FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977p@chr15:68805200..68805208, +
7.58e-23FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1p@chr13:110840203..110840210, -
7.58e-23FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1p@chr13:110840203..110840210, -
7.72e-22FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49cp12@CSGALNACT1
7.72e-22FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49cp12@CSGALNACT1
2.4e-20FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242p@chr4:174429652..174429665, +
2.4e-20FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242p@chr4:174429652..174429665, +
5.89e-20FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3p@chr3:162156271..162156273, -
5.89e-20FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3p@chr3:162156271..162156273, -
7.13e-20FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05p@chr4:174427862..174427899, +
7.13e-20FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05p@chr4:174427862..174427899, +
1.95e-18FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20p2@SLC35D3
1.95e-18FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20p2@SLC35D3
9.07e-18FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298p33@SMTN
9.07e-18FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298p6@COMMD10
9.07e-18FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298p@chr19:18543312..18543351, +
9.07e-18FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298p@chr3:194215033..194215040, -
9.07e-18FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298p6@COMMD10
9.07e-18FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298p@chr3:194215033..194215040, -
9.07e-18FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298p@chr18:43690139..43690142, +
9.07e-18FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298p@chr18:43690139..43690142, +
9.07e-18FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298p6@C9orf78
9.07e-18FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298p6@C9orf78
9.07e-18FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298p4@CHRNA6
9.07e-18FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298p4@CHRNA6
9.07e-18FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298p@chr7:101461145..101461152, +
9.07e-18FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298p@chr7:101461145..101461152, +
9.07e-18FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298p33@SMTN
9.07e-18FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298p@chr19:18543312..18543351, +
1.57e-17FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791p@chr8:37003588..37003608, -
1.57e-17FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791p@chr8:37003588..37003608, -
3.38e-16FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41cap@chr1:229041596..229041602, -
3.38e-16FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41cap@chr1:229041596..229041602, -
1.07e-15FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dcp9@FDFT1
1.07e-15FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dcp9@FDFT1
1.13e-15FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4p@chr6:25004775..25004790, -
1.13e-15FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4p@chr6:25004775..25004790, -
1.22e-15FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5bafp4@ENST00000443508
1.22e-15FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5bafp4@ENST00000443508
1.63e-15FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680p@chr5:172901990..172901996, +
1.63e-15FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680p@chr5:172901990..172901996, +
1.08e-14FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502babp@chr17:38698622..38698655, -
1.08e-14FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502babp@chr17:38698622..38698655, -
1.19e-14FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9cp@chr2:45233119..45233139, -
1.19e-14FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9cp@chr2:45233119..45233139, -
1.19e-14FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9cp@chr7:94060437..94060448, +
1.19e-14FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9cp@chr7:94060437..94060448, +
2.89e-14FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676p6@LRRC32
2.89e-14FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676p6@LRRC32
3.04e-14FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77ap@chr18:73967189..73967200, -
3.04e-14FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77ap@chr18:73967189..73967200, -
3.25e-14FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefdp@chr4:8296194..8296199, +
3.25e-14FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefdp@chr4:8296194..8296199, +
1.66e-13FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4p23@CYB5R3
1.66e-13FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4p23@CYB5R3
1.9e-13FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7p1@ENST00000513690
1.9e-13FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7p1@ENST00000513690
3.14e-13FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0cep@chr4:1160761..1160774, -
3.14e-13FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0cep@chr4:1160761..1160774, -
3.49e-13FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ffp@chr1:246023985..246024006, -
3.49e-13FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ffp@chr1:246023985..246024006, -
3.61e-13FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4p10@CREB3L1
3.61e-13FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4p10@CREB3L1
4.81e-13FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173p@chr5:59792105..59792117, -
4.81e-13FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173p@chr5:59792105..59792117, -
5.76e-13FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415cp20@RIMS1
5.76e-13FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415cp20@RIMS1
8.38e-13FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2p5@PITX2
8.38e-13FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2p5@PITX2
2.19e-12FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9ep2@ENST00000467484
2.19e-12FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr7:95979117..95979120, +
2.19e-12FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9ep2@ENST00000467484
2.19e-12FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9ep20@ARSJ
2.19e-12FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9ep20@ARSJ
2.19e-12FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr7:95979117..95979120, +
2.19e-12FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr4:120446538..120446544, -
2.19e-12FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr4:120446538..120446544, -
2.19e-12FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr3:123522645..123522646, -
2.19e-12FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9ep@chr3:123522645..123522646, -
2.19e-12FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9ep1@H2AFZP1
2.19e-12FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9ep1@H2AFZP1
2.45e-12FFCP PHASE2:Hg19::chr22:50942880..50942889,-#_f318eb22baad8eb4aa141aeb58f69424p@chr22:50942880..50942889, -
2.45e-12FFCP PHASE1:Hg19::chr8:67372487..67372498,+#_f318eb22baad8eb4aa141aeb58f69424p14@C8orf46

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