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{{UBERON
{{UBERON
|id=UBERON:0003124
|alt_id=
|name=chorion
|namespace=
|def="The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion]
|xref=BTO:0000252;;EFO:0002780;;EHDAA:150;;EHDAA2:0000245;;EMAPA:16112;;EV:0100121;;FMA:80224;;GAID:1299;;MESH:A.16.254.403.473;;ncithesaurus:Chorion;;VHOG:0000200
|is_a=UBERON:0005631
|synonym="chorion (vertebrates)" EXACT []
|comment=Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"].
|comment=Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"].
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005971
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003124
|is_a=UBERON:0004120 ;;UBERON:0005631
|is_obsolete=
|located_in=
|located_in=
|name=chorion
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="chorion (vertebrates)" EXACT [];;"chorion frondosum" RELATED [Wikipedia:Chorion];;"chorionic sac" RELATED [Wikipedia:Chorion]
|union_of=
|xref=BTO:0000252;;EFO:0002780;;EHDAA2:0000245;;EHDAA:150;;EMAPA:16112;;EV:0100121;;FMA:80224;;GAID:1299;;http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png;;MESH:A.16.254.403.473;;ncithesaurus:Chorion;;ncithesaurus:Chorionic_Sac;;VHOG:0000200
}}
}}

Latest revision as of 17:38, 12 September 2014

Name:chorion
Namespace:FANTOM
Definition:"The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion]
Xrefs:
links:

BTO:0000252
EFO:0002780
EHDAA2:0000245
EHDAA:150
EMAPA:16112
EV:0100121
FMA:80224
GAID:1299
[ Gray24.png Gray24.png]
MESH:A.16.254.403.473
ncithesaurus:Chorion
ncithesaurus:Chorionic_Sac

VHOG:0000200
Synonyms: "chorion (vertebrates)" EXACT []
"chorion frondosum" RELATED [Wikipedia:Chorion]
"chorionic sac" RELATED [Wikipedia:Chorion]
Comments:Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"].
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005631(extraembryonic membrane)
develops_from:UBERON:0005971(amniotic fold)



Children

disjoint from:UBERON:0000920 (egg chorion)
develops from:UBERON:0001987 (placenta)
part of:FF:0000038 (human chorionic membrane stem cell sample),CL:0002541 (chorionic membrane mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003124 (chorion), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.61e-117FFCP PHASE1:Hg19::chr20:36794938..36794945,-#_b2df6c993a4945088e6a7e38bb2c88dbp45@TGM2
5.61e-117FFCP PHASE2:Hg19::chr20:36794938..36794945,-#_b2df6c993a4945088e6a7e38bb2c88dbp45@TGM2
3.15e-112FFCP PHASE2:Hg19::chr1:103299100..103299144,+#_20fc84fbfe72dc4a5c867c50ead65d03p@chr1:103299100..103299144, +
3.15e-112FFCP PHASE1:Hg19::chr1:103299100..103299144,+#_20fc84fbfe72dc4a5c867c50ead65d03p@chr1:103299100..103299144, +
8.12e-106FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_81322874e48cfdd4687643c18237bf8bp1@ENST00000469806
8.12e-106FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_81322874e48cfdd4687643c18237bf8bp1@ENST00000469806
1.58e-98FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_820bd0572bdae8b30e402d2127b882a1p21@ST5
1.58e-98FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_820bd0572bdae8b30e402d2127b882a1p21@ST5
3.76e-98FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_2e95861edc3dd0d289d1ab405efd6e0dp16@ST5
3.76e-98FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_2e95861edc3dd0d289d1ab405efd6e0dp16@ST5
1.83e-97FFCP PHASE1:Hg19::chr2:174891341..174891354,-#_58b367fe44fca1d8bb073c80b5a2360cp@chr2:174891341..174891354, -
1.83e-97FFCP PHASE2:Hg19::chr2:174891341..174891354,-#_58b367fe44fca1d8bb073c80b5a2360cp@chr2:174891341..174891354, -
1.18e-92FFCP PHASE2:Hg19::chr8:19936775..19936791,+#_574b236859c56ac889e93fd489300c9fp2@ENST00000519197
1.18e-92FFCP PHASE1:Hg19::chr8:19936775..19936791,+#_574b236859c56ac889e93fd489300c9fp2@ENST00000519197
4.94e-92FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_72a2ae99647b497539c9c7e76e778d08p17@ST5
4.94e-92FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_72a2ae99647b497539c9c7e76e778d08p17@ST5
3.52e-90FFCP PHASE1:Hg19::chr7:150553527..150553540,+#_dca8a7c9dfd2f22bb04cf3d84b72f288p10@ABP1
3.52e-90FFCP PHASE2:Hg19::chr19:4234683..4234696,+#_dca8a7c9dfd2f22bb04cf3d84b72f288p@chr19:4234683..4234696, +
3.52e-90FFCP PHASE1:Hg19::chr14:77951114..77951128,-#_dca8a7c9dfd2f22bb04cf3d84b72f288p9@ISM2
3.52e-90FFCP PHASE2:Hg19::chr7:150553527..150553540,+#_dca8a7c9dfd2f22bb04cf3d84b72f288p10@ABP1
3.52e-90FFCP PHASE1:Hg19::chr19:4234683..4234696,+#_dca8a7c9dfd2f22bb04cf3d84b72f288p@chr19:4234683..4234696, +
3.52e-90FFCP PHASE2:Hg19::chr14:77951114..77951128,-#_dca8a7c9dfd2f22bb04cf3d84b72f288p9@ISM2
4.43e-90FFCP PHASE2:Hg19::chr4:10616734..10616776,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr4:10616734..10616776, +
4.43e-90FFCP PHASE1:Hg19::chr1:120056675..120056682,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr1:120056675..120056682, +
4.43e-90FFCP PHASE1:Hg19::chr20:11850605..11850610,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr20:11850605..11850610, +
4.43e-90FFCP PHASE1:Hg19::chr16:30123873..30123913,-#_7d4dc3ce246c8166dbec006d82dab1f3p@chr16:30123873..30123913, -
4.43e-90FFCP PHASE1:Hg19::chr4:10616734..10616776,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr4:10616734..10616776, +
4.43e-90FFCP PHASE1:Hg19::chr1:43987714..43987727,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr1:43987714..43987727, +
4.43e-90FFCP PHASE2:Hg19::chr1:120056675..120056682,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr1:120056675..120056682, +
4.43e-90FFCP PHASE2:Hg19::chr16:30123873..30123913,-#_7d4dc3ce246c8166dbec006d82dab1f3p@chr16:30123873..30123913, -
4.43e-90FFCP PHASE2:Hg19::chr20:11850605..11850610,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr20:11850605..11850610, +
4.43e-90FFCP PHASE2:Hg19::chr1:43987714..43987727,+#_7d4dc3ce246c8166dbec006d82dab1f3p@chr1:43987714..43987727, +
5.58e-90FFCP PHASE1:Hg19::chr14:34509180..34509193,+#_fa6bb5527d1e8e1056adc5cf885fd113p1@ENST00000555922
5.58e-90FFCP PHASE1:Hg19::chr1:43987687..43987701,+#_fa6bb5527d1e8e1056adc5cf885fd113p@chr1:43987687..43987701, +
5.58e-90FFCP PHASE1:Hg19::chr2:86094764..86094796,-#_fa6bb5527d1e8e1056adc5cf885fd113p9@ST3GAL5
5.58e-90FFCP PHASE2:Hg19::chr14:34509180..34509193,+#_fa6bb5527d1e8e1056adc5cf885fd113p1@ENST00000555922
5.58e-90FFCP PHASE2:Hg19::chr1:43987687..43987701,+#_fa6bb5527d1e8e1056adc5cf885fd113p@chr1:43987687..43987701, +
5.58e-90FFCP PHASE2:Hg19::chr2:86094764..86094796,-#_fa6bb5527d1e8e1056adc5cf885fd113p9@ST3GAL5
5.11e-88FFCP PHASE1:Hg19::chrX:110507067..110507079,-#_e99d28219af1cfb914723434fa2a7e06p6@CAPN6
5.11e-88FFCP PHASE2:Hg19::chrX:110507067..110507079,-#_e99d28219af1cfb914723434fa2a7e06p6@CAPN6
1.05e-87FFCP PHASE1:Hg19::chr2:237683203..237683210,+#_a93425b79ebf03dbf03e21a184748bc8p@chr2:237683203..237683210, +
1.05e-87FFCP PHASE2:Hg19::chr2:237683203..237683210,+#_a93425b79ebf03dbf03e21a184748bc8p@chr2:237683203..237683210, +
1.5e-87FFCP PHASE2:Hg19::chr11:1950008..1950019,+#_89138a419ba14f43bfc70ac5aca066aap@chr11:1950008..1950019, +
1.5e-87FFCP PHASE1:Hg19::chr11:1950008..1950019,+#_89138a419ba14f43bfc70ac5aca066aap@chr11:1950008..1950019, +
2.15e-87FFCP PHASE2:Hg19::chr17:2278441..2278454,+#_286876a790a731a2d908dc2e4fffa406p13@SGSM2
2.15e-87FFCP PHASE1:Hg19::chr17:2278441..2278454,+#_286876a790a731a2d908dc2e4fffa406p13@SGSM2
1.11e-86FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_426d7429c3a211158f16debe1699a1e6p@chr2:237683212..237683239, +
1.11e-86FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_426d7429c3a211158f16debe1699a1e6p@chr2:237683212..237683239, +
1.87e-86FFCP PHASE2:Mm9::chr13:27337717..27337754,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27337717..27337754, -
1.87e-86FFCP PHASE1:Mm9::chr13:61041595..61041607,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:61041595..61041607, -
1.87e-86FFCP PHASE2:Mm9::chr13:27440741..27440750,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27440741..27440750, +
1.87e-86FFCP PHASE1:Mm9::chr17:8927606..8927607,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr17:8927606..8927607, -
1.87e-86FFCP PHASE1:Mm9::chr13:43250181..43250190,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:43250181..43250190, -
1.87e-86FFCP PHASE2:Mm9::chr3:89171538..89171544,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr3:89171538..89171544, +
1.87e-86FFCP PHASE1:Mm9::chr13:27337717..27337754,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27337717..27337754, -
1.87e-86FFCP PHASE2:Mm9::chr2:4310640..4310648,+#_9d1158fd50cdaf34c974534aee2b4c8bp59@Frmd4a
1.87e-86FFCP PHASE2:Mm9::chr16:92613101..92613124,+#_9d1158fd50cdaf34c974534aee2b4c8bp2@ENSMUST00000148919
1.87e-86FFCP PHASE1:Mm9::chr7:137716644..137716651,-#_9d1158fd50cdaf34c974534aee2b4c8bp5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr4:140663013..140663022,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr4:140663013..140663022, +
1.87e-86FFCP PHASE1:Mm9::chr14:69915427..69915460,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr14:69915427..69915460, -
1.87e-86FFCP PHASE1:Mm9::chr13:27734346..27734351,-#_9d1158fd50cdaf34c974534aee2b4c8bp2@Prl7a1
1.87e-86FFCP PHASE2:Mm9::chr17:35991777..35991786,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr17:35991777..35991786, +
1.87e-86FFCP PHASE1:Mm9::chr6:97907005..97907011,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr6:97907005..97907011, +
1.87e-86FFCP PHASE1:Mm9::chr14:55273056..55273059,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr14:55273056..55273059, -
1.87e-86FFCP PHASE1:Mm9::chr13:27335655..27335658,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27335655..27335658, +
1.87e-86FFCP PHASE2:Mm9::chr14:69915427..69915460,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr14:69915427..69915460, -
1.87e-86FFCP PHASE2:Mm9::chr13:43250181..43250190,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:43250181..43250190, -
1.87e-86FFCP PHASE1:Mm9::chr13:27440741..27440750,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27440741..27440750, +
1.87e-86FFCP PHASE2:Mm9::chr4:140663013..140663022,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr4:140663013..140663022, +
1.87e-86FFCP PHASE1:Mm9::chr16:92613101..92613124,+#_9d1158fd50cdaf34c974534aee2b4c8bp2@ENSMUST00000148919
1.87e-86FFCP PHASE1:Mm9::chr2:4310640..4310648,+#_9d1158fd50cdaf34c974534aee2b4c8bp59@Frmd4a
1.87e-86FFCP PHASE1:Mm9::chr17:35991777..35991786,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr17:35991777..35991786, +
1.87e-86FFCP PHASE2:Mm9::chr6:97907005..97907011,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr6:97907005..97907011, +
1.87e-86FFCP PHASE2:Mm9::chr17:8927606..8927607,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr17:8927606..8927607, -
1.87e-86FFCP PHASE2:Mm9::chr6:121053540..121053548,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr6:121053540..121053548, -
1.87e-86FFCP PHASE2:Mm9::chr14:55273056..55273059,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr14:55273056..55273059, -
1.87e-86FFCP PHASE2:Mm9::chr7:17788884..17788890,+#_9d1158fd50cdaf34c974534aee2b4c8bp3@Psg29
1.87e-86FFCP PHASE2:Mm9::chr13:27734346..27734351,-#_9d1158fd50cdaf34c974534aee2b4c8bp2@Prl7a1
1.87e-86FFCP PHASE1:Mm9::chr7:17788884..17788890,+#_9d1158fd50cdaf34c974534aee2b4c8bp3@Psg29
1.87e-86FFCP PHASE2:Mm9::chr7:137716644..137716651,-#_9d1158fd50cdaf34c974534aee2b4c8bp5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr3:89171538..89171544,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr3:89171538..89171544, +
1.87e-86FFCP PHASE1:Mm9::chr6:121053540..121053548,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr6:121053540..121053548, -
1.87e-86FFCP PHASE2:Mm9::chr13:61041595..61041607,-#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:61041595..61041607, -
1.87e-86FFCP PHASE2:Mm9::chr13:27335655..27335658,+#_9d1158fd50cdaf34c974534aee2b4c8bp@chr13:27335655..27335658, +
1.28e-84FFCP PHASE2:Hg19::chr11:76366237..76366246,+#_43c28df285224ba70a431dbf86c56d37p@chr11:76366237..76366246, +
1.28e-84FFCP PHASE2:Hg19::chr10:134275596..134275597,+#_43c28df285224ba70a431dbf86c56d37p@chr10:134275596..134275597, +
1.28e-84FFCP PHASE1:Hg19::chr19:17423022..17423028,+#_43c28df285224ba70a431dbf86c56d37p@chr19:17423022..17423028, +
1.28e-84FFCP PHASE1:Hg19::chr2:216693832..216693839,-#_43c28df285224ba70a431dbf86c56d37p@chr2:216693832..216693839, -
1.28e-84FFCP PHASE2:Hg19::chr6:22303026..22303033,-#_43c28df285224ba70a431dbf86c56d37p10@PRL
1.28e-84FFCP PHASE2:Hg19::chr9:118997516..118997525,+#_43c28df285224ba70a431dbf86c56d37p@chr9:118997516..118997525, +
1.28e-84FFCP PHASE2:Hg19::chr14:77950741..77950750,-#_43c28df285224ba70a431dbf86c56d37p10@ISM2
1.28e-84FFCP PHASE1:Hg19::chr7:150554537..150554542,+#_43c28df285224ba70a431dbf86c56d37p24@ABP1
1.28e-84FFCP PHASE2:Hg19::chr22:32957467..32957470,+#_43c28df285224ba70a431dbf86c56d37p@chr22:32957467..32957470, +
1.28e-84FFCP PHASE2:Hg19::chr19:17423022..17423028,+#_43c28df285224ba70a431dbf86c56d37p@chr19:17423022..17423028, +
1.28e-84FFCP PHASE2:Hg19::chr16:70747947..70747956,+#_43c28df285224ba70a431dbf86c56d37p1@BC128395
1.28e-84FFCP PHASE1:Hg19::chr19:52294756..52294758,-#_43c28df285224ba70a431dbf86c56d37p@chr19:52294756..52294758, -
1.28e-84FFCP PHASE1:Hg19::chr11:76366237..76366246,+#_43c28df285224ba70a431dbf86c56d37p@chr11:76366237..76366246, +
1.28e-84FFCP PHASE1:Hg19::chr16:70747947..70747956,+#_43c28df285224ba70a431dbf86c56d37p1@BC128395
1.28e-84FFCP PHASE2:Hg19::chr2:216693832..216693839,-#_43c28df285224ba70a431dbf86c56d37p@chr2:216693832..216693839, -
1.28e-84FFCP PHASE1:Hg19::chr10:134275596..134275597,+#_43c28df285224ba70a431dbf86c56d37p@chr10:134275596..134275597, +

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